Query= MSMg01no525_i19.b1 MSMg01no525_i19.b1 CHROMAT_FILE:
MSMg01no525_i19.b1 PHD_FILE: MSMg01no525_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(557 letters)
>mm_chr9_20970438_20971395
Length = 958
Score = 1056 bits (546), Expect = 0.0
Identities = 555/558 (99%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 1 acatgcccttggcacaggtccatggggcaccttggggtgccatgaagccctaactgcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 acatgcccttggcacaggtccatggggcaccttggggtgccatgaagccctaactgcctg 699
Query: 61 gctagggcttgttccaagtcataatacagcctggactaacaccagctactgtagggctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gctagggcttgttccaagtcataatacagcctggactaacaccagctactgtagggctgc 639
Query: 121 cctgatccaattctccacccactagcgtctagtgtgctaccccatgggaagtatccagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cctgatccaattctccacccactagcgtctagtgtgctaccccatgggaagtatccagcg 579
Query: 181 tggttcttcagtcaccccttatcgaatgttccctaggacaccccacaattagtccagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tggttcttcagtcaccccttatcgaatgttccctaggacaccccacaattagtccagcct 519
Query: 241 cagtcagtctctccaagaggtactcccattccagcagctgctctgtaccattactggcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cagtcagtctctccaagaggtactcccattccagcagctgctctgtaccattactggcta 459
Query: 301 agcttgtagagagccctaaaacagcatggatccccccgaccctcaactttaccctgggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agcttgtagagagccctaaaacagcatggatccccccgaccctcaactttaccctgggta 399
Query: 361 tcccataagttaaagggcttctggtgcagtggcgccccctctctccacccacgcgggtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcccataagttaaagggcttctggtgcagtggcgccccctctctccacccacgcgggtca 339
Query: 421 cgctggaccccc-atccgccccacagcgccccctttggccagcattgcgcgtggcgcccc 479
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cgctggcccccccatccgccccacagcgccccctttggccagcattgcgcgtggcgcccc 279
Query: 480 tcgagcgcttgtgcgctccgcgcgccgggggagtctcaccgcctactgctgcctccgccg 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcgagcgcttgtgcgctccgctcgccgggggagtctcaccgcctactgctgcctccgccg 219
Query: 540 gtaccggtgccgtggaag 557
||||||||||||||||||
Sbjct: 218 gtaccggtgccgtggaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_i19.g1 MSMg01no525_i19.g1 CHROMAT_FILE:
MSMg01no525_i19.g1 PHD_FILE: MSMg01no525_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(582 letters)
>mm_chr9_20805100_20806083
Length = 984
Score = 1094 bits (566), Expect = 0.0
Identities = 579/584 (99%), Gaps = 2/584 (0%)
Strand = Plus / Plus
Query: 1 caccctttgtactcctcatttacaaaagaatcacaattttcccattatccaggtgatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctttgtactcctcatttacaaaagaatcacaattttcccattatccaggtgatgaa 260
Query: 61 aaggaggttggctcagagaccagagtccaagctctgtccagccctcatagtggatggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaggttggctcagagaccagagtccaagctctgtccagccctcatagtggatggcag 320
Query: 121 tgagccaggtataagctctcagcaccccctgaaggtcaagtgtggaacagagacaaacca 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagccaggtgtaagctctcagcaccccctgaaggtcaagtgtggaacagagacaaacca 380
Query: 181 taaact--ttcaattatctttggagaggttcttagtgaggtgatctggatctgttcatga 238
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaactctttcaattatctttggagaggttcttagtgaggtgatctggatctgttcatga 440
Query: 239 ggtaatttttttttcccctctgccctgggagagtcctagaaggacagggggcaggatcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaatttttttttcccctctgccctgggagagtcctagaaggacagggggcaggatcct 500
Query: 299 ggattagatgtgagtggcgggacacagggctgataggagggatttcagagggatatagcc 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggattagatgtgagtggagggacacagggctgataggagggatttcagagggatatagcc 560
Query: 359 agccctggagaatctaagaaatactgaaagctttctggcaggactttcatttaaagaatc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccctggagaatctaagaaatactgaaagctttctggcaggactttcatttaaagaatc 620
Query: 419 aaacacatctggaaagaggaggctggaggatttcaaggttacatactggagttctctctc 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 aaacacatctggaaagaggaggctggaggatttcaagattacatactggagttctctctc 680
Query: 479 aacaaataaataaaccccataggggctggagagatggctcagctgctagggcacctaaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaaataaataaaccccataggggctggagagatggctcagctgctagggcacctaaac 740
Query: 539 tgcacaaacatcttgatctttagcactaaataaaccagcatggt 582
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcacaaacatcttgatctttagcactaaataaaccagcatggt 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
