BAC Information

Click to search

BAC

Clone NameMSMg01-525M04
Chromosome9 (Build37)
Map Location 94,328,086 - 94,328,428
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525M04.T7 (MSMg01no525_m04.b1)MSMg01-525M04.TJ (MSMg01no525_m04.g1)
ACCAG595518AG595519
length766765
length of high quality
(start - end)
397 (40 - 436)333 (70 - 402)
definitionCHROMAT_FILE: MSMg01no525_m04.b1 PHD_FILE: MSMg01no525_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:29 2005CHROMAT_FILE: MSMg01no525_m04.g1 PHD_FILE: MSMg01no525_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGGTTAGCTCTATACCCCATTTTTTGATTGAGTTGTTTGTTTGTTTGTT
TGTTTGTTTTTTGGTTTGGTGGTTAGCTTCTTGAATTCTTTTTTATATTT
TGAATATTAGCCCTCTATCGGATGTGGGGTTAGTGAAGATTTTTTTCCCA
ATCTGTAGGTTGCCGATATGTCCTATTGACTATGTCCTTTGCCTTACAGA
AGCTTTTCAGTTTCATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCA
TGATCCATTGGAGTTCTGTTTAGGACATTTCCCCCTGTGCCAATGAGTTC
AAGGATCTTTCCCACTTTCTCTTCTATTAGATTGAGTGTATCTGGTTTTA
TGTTGAGGTCCTTGATCCACTTGGACTTGAGCTTTGTGCAAGGCTACAAA
TATGGTTCCCGTTTTCATTCTTCTACCTTCAGGCAGTTAGCCATATTAGC
TCTTTTTATTGAAGATGCTTCCTTTTTCCTATTGGACTTTCTTTACTCCT
TTGCCCATTACCCTGTGTTTGGATTTTTGTGTTCCCCATTTCTGTCTTCT
CTGTCTTTTTTTCCCTTGTCCATCTTTGTTTTTTTCCCGCCCACTTTTTC
TCCGCACTCTCCCCTTTTTTTTCCTTACCCCCTTTTGTTCCCCGTTTTGT
TATTTTATCGCCCGCTTTTACTCTCACTATTTATTCTGTTTTGCTTTTGT
TTATTCTGTCATCTAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACAAAGTTGAGTTAGTAGTAAGCGCTCAT
ATTCATGGAATAATAGAAGGGTTCTATTTGAGAGTTGCTTTTATAAAGTG
AAAGAGGGTCTGGGGCATCTGCAGTTTGCTTCCAAATACAGAGAACTTCA
AGATCTGTTCCCTGAGAGTTGTAAGGTTTGAGCAGGGGGGGGGGAGGGTA
GTAATTACTTAATTTTTCTGTGCCTTATTTTCCAAGCTGTGAAAGGTAAC
AGTGTGTCATATTCCCCCTGAGAGCCTCTGGCCTATAGAAGGTGCTCAGG
GGACTTGCTTTGGTCCCATGTTAGTAGTGGAAAGGCCTCTGTTAAAATAT
GAATAAAAACTGCAGGCTTGTTCTGCGTACACTGTGATATTCAAACCAGG
CCCACTTTTCCCAAGCTTGCTCCTTTCCCAGGGGTTGTTCTCTTAGCGGT
TTATGGGTAGTTTTCTCACTGAAACCATATCTCAAAATTTAGCACCCCTT
TCTTTTTTCACTCCCTCCTGCCCACCTTTTTCTTTCTTTCCTTTTTACCC
CCCTTTTTTTTCCCACTTTTCCTTTACTTTCTTTCTATTTTTTCCTTTCA
TCCCCCAAACTTTTTCCCTTTTCATTCTCCCTTTCATTCTTTTTTTTTTC
GCACCTTTTTTCTCTTTCCCTCTTTTTTTCCCTTTTTTTCCCCGCCTTCT
CTTCCTTTTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_m04.g1 MSMg01no525_m04.g1 CHROMAT_FILE:
MSMg01no525_m04.g1 PHD_FILE: MSMg01no525_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:29 2005
         (333 letters)



>mm_chr9_94328057_94328789
          Length = 733

 Score =  601 bits (311), Expect = e-176
 Identities = 331/343 (96%), Gaps = 10/343 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaaagttgagttagtagtaagcgctcatattcatggaataatagaagggttctattt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 372 tcacaaagttgagttagtagtaagcgctcatcttcatggaataatagaagggttctattt 313

                                                                       
Query: 61  gagagttgcttttataaagtgaaagagggtctggggcatctgcagtttgcttccaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gagagttgcttttataaagtgaaagagggtctggggcatctgcagtttgcttccaaatac 253

                                                                       
Query: 121 agagaacttcaagatctgttccctgagagttgtaaggtttgagcaggggggg-------- 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 252 agagaacttcaagatctgttccctgagagttgtaaggtttgagcagggggggcggggggg 193

                                                                       
Query: 173 gggagggtagtaattacttaatttttct--gtgccttattttccaagctgtgaaaggtaa 230
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 192 gggagggtagtaattacttaatttttctctgtgccttattttccaagctgtgaaaggtaa 133

                                                                       
Query: 231 cagtgtgtcatattccccctgagagcctctggcctatagaaggtgctcaggggacttgct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cagtgtgtcatattccccctgagagcctctggcctatagaaggtgctcaggggacttgct 73

                                                      
Query: 291 ttggtcccatgttagtagtggaaaggcctctgttaaaatatga 333
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 72  ttggtcccatgttagtagtggaaaggcctctggtaaaatatga 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)