XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAAGACTCAAGTGGTTTTTCAAATGTCCTTGTGGGTGAGTAGAATGGCC
GAGCAGGTAAAGGGTCTTGACTAGCAAGCCTGATGACGTGATTTAGGCGT
GAGAACCCCACGTGAAGGTAGGAGGAGAGAACTGGTTCATGGGGCTGTTC
TGTGGCCTCCACGCTTGCCCCACGGATGTGGCCACATGCTAGTCTGATGG
CAGCTACTCTTTAGTTGAGATTCCTATCTTCCCAAGTGTCTCAAATTTAC
AACCAAGAGGAGCTATCATGGTTGGCTTGGTGACTTGGAGGAGAACACTG
TTGAGGAGACTCACCAAGCTCCATATGATCCATTCTGGCAATCTGTGAAG
TCAGAAGTATGTTCATAATAACACTAATGAATTATCACTCGCTCACTCTG
ATGTTCTCTCCCATGGTGGAGAGTGGCCTGCCCCATAGGCTACTGAGTTT
CTGTTACTGTGGAGCATGGAACCCAGAAAGCCATGTGAGAAGCCAGCTGG
CCTCCAGCAGCTAGTCTGGAAATTATAGAGATTTGTTGCTGATGACGATA
TTTTTATTGATTAAAGAAGAGGTTTGCTCTGTTGCCCNAGCAGACCTCAG
ATTTCCATCTTTTGCTTCTGCCTCCCAAATACCCTTATTTTANGTATGAG
CTGTTAGGATATTTTCTAAAGTTTAATATAAGAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGTTTGGTCTCCTACTTGTTTCTCAGGCTT
TGGACTTAGTAATTGCTGAGTTCTGATCCTTTGAAGGAATCCTGGCATCT
TGCCTTTCCATGTTTCTGGCTTGTTTGTGTTGCAATCTGCAATCTGTGGG
GATGGCTGCCTTTTCTGTTTTCATTTGAGAGCTTACTTAGTGACCTGCTT
TTGCTGCAAAGCCGAGTCCTCTAGAGAACAGGACCCATGATAATAGCAAT
GCACAAAATCAAACCAGGGAAAGGAACATGCTCTAAAACAACTAGAGCCA
TCACTAATGGCCACAGAAAAGTATAACAGTCTTTACAGTAGTCTCTGAAG
TTGAGAGTTACTTGTGTAAAATGAAAATAATAATCAAGTGAAAGGACAGA
AGGAGACAGGGAAAACAGAGAAGGAAGATGAAGCAAACAGAAGAAAGGGG
AAAATCGCAAAGAGGGAGGCAAAAGAACAAGGAATTTAAAAACCCACACA
TTAAGGAAAAAATGGGTAAGCAAACTAATTCAACCAACTAAATAAATAAT
TAAATAAGTATAAACACAAAGAGGGAAGGAAAAACAAATAATCTGCCTTT
TGAAAAATATTGAGTATCAGAAAATGGGGGCTGACACAGGAGCCAAAATA
ACATTCTAAAAGAAAATTAAAAAA

Query= MSMg01no526_a22.g1 MSMg01no526_a22.g1 CHROMAT_FILE:
MSMg01no526_a22.g1 PHD_FILE: MSMg01no526_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:52 2005
         (620 letters)



>mm_chr9_116568943_116569965
          Length = 1023

 Score = 1060 bits (548), Expect = 0.0
 Identities = 605/626 (96%), Gaps = 9/626 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttggtctcctacttgtttctcaggctttggacttagtaattgctgagttctgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtttggtctcctacttgtttctcaggctttggacttagtaattgctgagttctgatc 260

                                                                       
Query: 61  ctttgaaggaatcctggcatcttgcctttccatgtttctggcttgtttgtgttgcaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgaaggaatcctggcatcttgcctttccatgtttctggcttgtttgtgttgcaatct 320

                                                                       
Query: 121 gcaatctgtggggatggctgccttttctgttttcatttgagagcttacttagtgacctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatctgtggggatggctgccttttctgttttcatttgagagcttacttagtgacctgc 380

                                                                       
Query: 181 ttttgctgcaaagccgagtcctctagagaacaggacccatgataatagcaatgcacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgctgcaaagccgagtcctctagagaacaggacccatgataatagcaatgcacaaaa 440

                                                                       
Query: 241 tcaaaccagggaaaggaacatgctctaaaacaactagagccatcactaatggccacagaa 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaaccagggaaaggaacatgctttaaaacaactagagccatcactaatggccacagaa 500

                                                                       
Query: 301 aagtataacagtctttacagtagtctctgaagttgagagttacttgtgtaaaatgaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtataacagtctttacagtagtctctgaagttgagagttacttgtgtaaaatgaaaat 560

                                                                       
Query: 361 aataatcaagtgaaaggacagaaggagacagggaaaacagagaaggaagatgaagcaaac 420
           |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 561 aataatcaagtgaaagaacagaaggagatagggaaaacagagaaggaagaagaagcaaac 620

                                                                       
Query: 421 agaagaaaggggaaaatcgcaaagagggaggcaaaagaacaaggaatttaaaaa-cccac 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ggaagaaaggggaaaatcgcaaagagggaggcaaaagaacaaggaatttaaaaaacccac 680

                                                                       
Query: 480 acattaaggaaaaaatgggtaagcaaactaattcaaccaactaa--a--taaataattaa 535
           |||||||||||||||||||||||||||||||  |||| ||||||  |  ||||||| |||
Sbjct: 681 acattaaggaaaaaatgggtaagcaaactaac-caactaactaactaactaaataaataa 739

                                                                       
Query: 536 ataagtataaacaca-aagagggaaggaaaaacaaataatctgccttttgaaaaatattg 594
           ||||  ||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 740 ataa--ataaaaacataagagggagggaaaaacaaataatctgctttttgaaaaatattg 797

                                     
Query: 595 agtatcagaaaatgggggctgacaca 620
           |||||||||||||| |||||||||||
Sbjct: 798 agtatcagaaaatgagggctgacaca 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space:   617930
Effective search space used:   617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)