BAC Information

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BAC

Clone NameMSMg01-526B02
Chromosome9 (Build37)
Map Location 56,902,923 - 56,903,545
singlet/doubletsinglet
Overlap genePtpn9
Upstream geneRcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn
Downstream gene2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B02.T7 (MSMg01no526_b02.b1)MSMg01-526B02.TJ (MSMg01no526_b02.g1)
ACCAG595751AG595752
length740741
length of high quality
(start - end)		702 (36 - 737)632 (68 - 699)
definitionCHROMAT_FILE: MSMg01no526_b02.b1 PHD_FILE: MSMg01no526_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:53 2005CHROMAT_FILE: MSMg01no526_b02.g1 PHD_FILE: MSMg01no526_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
GAATTCAGTGAAAAGGTTACCTATTCAGTAACATTCAAATTTACTTCTAG
TAGAGACAGTGAAACTAATTAGGCATTACAAAGAACCAAGCCGGAATAGC
TCAGGGCTAGTCTGCAGAGTGTTTACTTGAGGCAGTAGCCAGTCTTACCC
AAACACTAGCTAATAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCAC
TGAGACATAAATCTTCACTACAGCCAGGTATAGCAGGCTACATTGCATAT
TAGAAGCAAATTGGTGAATTCTTCTGACAAATGGAGATTCTCCACAGATA
CTTAAAAGTTACACTCATACAAGAATTTATCAGGGCCCAGGAAATGGGGG
GCGTTGTAGTATTGCATTATACACTAGAAGGTCTGCTAGAGCAGAACCCC
CTAGTGCTAGCTTTCATAGGCTCAAAGGAGTAGCATAAATTGTGACTAGG
GTGTGAAATCCTTAGCTGACCCTAGGCAGGACTGCTTTATCTTTACTGTA
AACATTTACCTGGTTCCTGTGAGTACTTTTGAAGTCATTCCTTTGTTTTG
TGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACTTCTTACCCCCTTT
TATTTTCTGTATTATATAAGACTGGTGTTCACTTTGTGATAATACATTCA
GATTCTACACAATCTCCTGTGTGCATCTGTCTGTCATTCG

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGCCTAGGTTGTGCTGGGATTAAAGG
CATATGTCATTCCCCACCTCCCAAGGGATTCCAACTTTTTTTAAAAGATG
TATTTATTTATTATATGTACGTGAGTACACTGTAGTTCTCTTCAGACACC
GGAGGAAGGCACCAGATCTCATTACAGATGGTGGTGAGCCACCACATGGT
TGCTGGGAATTGAACTCAGGACCTCTAGAAGAGCAGTCATTGCTCTTAAC
CGCTGAGCCATCTTTCTAGCCCCTCATTTACTCTTGTAAAATGTGGGAGT
CAGGGCTGGAAAGATGGCTCCACCATGTAAGGTGGAGGAGAAAACAATCC
TAAAACACAAGTCCTTAGCAATCAGGTCCTTTCAAGGCTGCATGTGCCCT
ATGGCAGGCCTGCCACCACATCACACCCCAGCACTTACTAACAAAACAAC
AGTGACAATAATAATTTTAACCAAGAATACTAGAAGTCCTATTATTAGAG
ATAAGAAAGTTGAGAAAGAAAACTTGGCATGATGGCACATGCCTATATTT
GGATCACAAGTTTGAGGCCTCTCTGAGTTACACAGTAAGATCCCATCTCA
CAACAGGAAAAGGGGGCGAGGGAGAGAAAGTACATAAGTAAGTGAAAGAA
TTCTGAAGACTAGGTCTCTGTTCAGACTATGGGATTTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b02.g1 MSMg01no526_b02.g1 CHROMAT_FILE:
MSMg01no526_b02.g1 PHD_FILE: MSMg01no526_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:53 2005
         (632 letters)



>mm_chr9_56902714_56903745
          Length = 1032

 Score = 1143 bits (591), Expect = 0.0
 Identities = 618/633 (97%), Gaps = 11/633 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagcctaggttgtgctgggattaaaggcatatgtcattccccacctcccaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 actctgtagcctaggttgtgctgggattaaaggcatatgtcattccccacctcccaaggg 269

                                                                       
Query: 61  attccaacttttttt-aaaagatgtatttatttattatatgtacgtgagtacactgtagt 119
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 attccaacttttttttaaaagatgtatttatttattatatgtatgtgagtacactgtagt 329

                                                                       
Query: 120 tctcttcagacaccggaggaaggcaccagatctcattacagatggtggtgagccaccaca 179
           ||||||||||||||||| ||||||||||||||||||||||||          ||||||||
Sbjct: 330 tctcttcagacaccggaagaaggcaccagatctcattacaga----------ccaccaca 379

                                                                       
Query: 180 tggttgctgggaattgaactcaggacctctagaagagcagtcattgctcttaaccgctga 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tggttgctgggaattgaactcaggacctctagaagagcagtcattgatcttaaccgctga 439

                                                                       
Query: 240 gccatctttctagcccctcatttactcttgtaaaatgtgggagtcagggctggaaagatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gccatctttctagcccctcatttactcttgtaaaatgtgggagtcagggctggaaagatg 499

                                                                       
Query: 300 gctccaccatgtaaggtggaggagaaaacaatcctaaaacacaagtccttagcaatcagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctccaccatgtaaggtggaggagaaaacaatcctaaaacacaagtccttagcaatcagg 559

                                                                       
Query: 360 tcctttcaaggctgcatgtgccctatggcaggcctgccaccacatcacaccccagcactt 419
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tcctttcaaggctgcatgtgccctatggcaggcctgccacctcatcacaccccagcactt 619

                                                                       
Query: 420 actaacaaaacaacagtgacaataataattttaaccaagaatactagaagtcctattatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actaacaaaacaacagtgacaataataattttaaccaagaatactagaagtcctattatt 679

                                                                       
Query: 480 agagataagaaagttgagaaagaaaacttggcatgatggcacatgcctatatttggatca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agagataagaaagttgagaaagaaaacttggcatgatggcacatgcctatatttggatca 739

                                                                       
Query: 540 caagtttgaggcctctctgagttacacagtaagatcccatctcacaacaggaaaaggggg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caagtttgaggcctctctgagttacacagtaagatcccatctcacaacaggaaaaggggg 799

                                            
Query: 600 cgagggagagaaagtacataagtaagtgaaaga 632
           |||||||||||||||||||||||||||||||||
Sbjct: 800 cgagggagagaaagtacataagtaagtgaaaga 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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