BAC Information

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BAC

Clone NameMSMg01-526D04
Chromosome9 (Build37)
Map Location 59,349,436 - 59,350,048
singlet/doubletsinglet
Overlap genenone
Upstream geneCd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119
Downstream gene4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526D04.T7 (MSMg01no526_d04.b1)MSMg01-526D04.TJ (MSMg01no526_d04.g1)
ACCAG595850AG595851
length739840
length of high quality
(start - end)
631 (38 - 668)68 (77 - 144)
definitionCHROMAT_FILE: MSMg01no526_d04.b1 PHD_FILE: MSMg01no526_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:02 2005CHROMAT_FILE: MSMg01no526_d04.g1 PHD_FILE: MSMg01no526_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
TCCCAATAACTACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGC
CCTCTTCTTGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAA
TAAATAAATCTTTTTTAAATGGTTTTTTAATTTGTAAATTCATCTGGAAA
AAGTCATGATATATGGCTAAACTGAAAATAAAAAAGTCACAATCCACGCT
GGAGGACAATCCCACGTGTATGTGTTCATTTACACAGGTAGAAAGCAAGC
AAGCTAGAGGAATATTTAAGCCTTATCCATGTTAATTTACAAGTCCTAAA
ATTTGTGGACTTTGAGCCCCAGCTAAGGAGCCATGATTGGACACAGCTAG
ATCTACCCACCTTTCGGGAAAACTTATTTTTTCCTTTTCTTTTCTGTCTC
TTTCCTTTGGATGCTGGCCAGAGCCTAAGTCTCTAAGTCTTATTTCTCTG
ATATTTGGGGTTTCTCACTCTTTCTGAAGCAGCACCCCCACCCCTTACAT
GTGGCTGCATACAGTGTCTGTGTCATATCTCTCTTCCCCTTCTCCATCTG
CCTCCTGCAAGTAGCTTCAGAGATCCAGCTTCCCTGTCCTGCCCTGCTGC
TTCTCTCTCGTTTTGGTTTCTCAAGACAGGATATTTCTGTATAGCCATAG
CTGTCTTGGAACTCAATCTGTAAACAGACTGGCCTCAAC
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGACAGCCAGGGTTGCTGTACAGAGGAACCCT
GTCTTGAAAAACTATCCTAAAAAAAGAAAGAAAGAGAGAGAGAGAATTGA
GGGGGGGTAGGGAGAGGGTGGGAGTATTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTCGCGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTCTTNCTTTTTTTTTTTCTTTTCTTTTTCTTTTTTTTTT
TCTTCTTCTTCCTTTCCTCTCTCTTTTCTNCTCCCTCCCTCTTTCTTTCT
TTTTCTTCTTCCTTTTTTTCTTTTTTTTTCTTTTCTTTTCTTTCCCCTTT
CTTCTTTTCCTTTTTCTTTTTTTCTTTCTCCTTTTTCTTTTTTCTTTCTT
TCTCTTTTCCTTTTTTTTTTTTTTTCTTCCTTTTTTCTCTCCCCCCCTTT
CTCTTTTCTTTTTTTTTTTTTTTCTTTTTTTCCTTCTCTTTTCCTCCTTT
TTCTTTTTTTTTTTTTTTCCCTTTTTTTCTTTTCTTTTTTTTCTTTTTTT
TTTTTTTTTTCTTTTCTCTTTTTTCTTTCTCTTCTTTTTTTTTTCTTTTT
TTTTTTCTTCTTTTTTTCTCCCCCTTTTCTCTTTTTTTTCTCCTTTTTTT
TTTTTCTCTTCTCTTTTTTCTTTCTTTTTCTTTTTTTCTTCTTCTCTCTC
TCTCCCTCTCTCTTTCTTTTCTTTCCCCTCCTCCCCTTTTTTTCCCCCCT
TTTCCTTCCTCTTTTTTTTTCTCTCTTTTCTTCTCTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_d04.b1 MSMg01no526_d04.b1 CHROMAT_FILE:
MSMg01no526_d04.b1 PHD_FILE: MSMg01no526_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:02 2005
         (631 letters)



>mm_chr9_59349232_59350262
          Length = 1031

 Score = 1154 bits (597), Expect = 0.0
 Identities = 609/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatcccaataactacatggtggctcacaaccatctgtaatgagatctgatgcc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatcccaacaactacatggtggctcacaaccatctgtaatgagatctgatgcc 264

                                                                       
Query: 65  ctcttcttgtgtgtctgaagacagctacagtgtacttacatataataaataaataaatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttcttgtgtgtctgaagacagctacagtgtacttacatataataaataaataaatct 324

                                                                       
Query: 125 tttttaaatggttttttaatttgtaaattcatctggaaaaagtcatgatatatggctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttaaatggttttttaatttgtaaattcatctggaaaaagtcatgatatatggctaaa 384

                                                                       
Query: 185 ctgaaaataaaaaagtcacaatccacgctggaggacaatcccacgtgtatgtgttcattt 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 ctgaaaataaaaaagtcacaatccacgctggaggacaatcccgcgtgtatgtgttcattt 444

                                                                       
Query: 245 acacaggtagaaagcaagcaagctagaggaatatttaagccttatccatgttaatttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacaggtagaaagcaagcaagctagaggaatatttaagccttatccatgttaatttaca 504

                                                                       
Query: 305 agtcctaaaatttgtggactttgagccccagctaaggagccatgattggacacagctaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 agtcctaaaatttgtggactttgagccccagctaaggagccatgattggacactgctaga 564

                                                                       
Query: 365 tctacccacctttcgggaaaacttattttttccttttcttttctgtctctttcctttgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctacccacctttcgggaaaacttattttttccttttcttttctgtctctttcctttgga 624

                                                                       
Query: 425 tgctggccagagcctaagtctctaagtcttatttctctgatatttggggtttctcactct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctggccagagcctaagtctctaagtcttatttctctgatatttggggtttctcactct 684

                                                                       
Query: 485 ttctgaagcagcacccccaccccttacatgtggctgcatacagtgtctgtgtcatatctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctgaagcagcacccccaccccttacatgtggctgcatacagtgtctgtgtcatatctc 744

                                                                       
Query: 545 tcttccccttctccatctgcctcctgcaagtagcttcagagatccagcttccctgtcctg 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 tcttccccttctccatctgcctcctgcaagtagcttcagagattcagcttccctgtcctg 804

                        
Query: 605 ccctgctgcttct 617
           |||||||||||||
Sbjct: 805 ccctgctgcttct 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)