Query= MSMg01no526_l18.b1 MSMg01no526_l18.b1 CHROMAT_FILE:
MSMg01no526_l18.b1 PHD_FILE: MSMg01no526_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:45 2005
(667 letters)
>mm_chr9_53346019_53347084
Length = 1066
Score = 1257 bits (650), Expect = 0.0
Identities = 659/662 (99%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 6 ggaattcatggcactgaaagcagaatctgaacaacaaagatgattttaaggatgaaaagc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggaattcatggcactgaaagcagaatctgaacaacaaagatgattttaaggatgaaaagc 807
Query: 66 aacaacttgagtttctaggcatcaagagaataagttaccttgttagtggggcagaaacat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aacaacttgagtttctaggcatcaagagaataagttaccttgttagtggggcagaaacat 747
Query: 126 aattattccaattagaaaggccctgtcatttccttaaggttttcttaacaaggcaggact 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aattattccaattagaaaggccctgtcatttccttaaggttttcttaacaaggcaggact 687
Query: 186 ttctcttcaggggatatgctgacagtatataaagcccctccccaccccctttcttacatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttctcttcaggggatatgctgacagtatataaagcccctccccaccccctttcttacatg 627
Query: 246 gaggaatgacatcctacttgtatctaatgaaatcagggttgctattaagcatcccataaa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaggaatgacatcctacttgtatctaatgaaatcagggttgctattaagcatcccataaa 567
Query: 306 atctgaggaaagaaaacatggaaaaatcctcataaaaattatccacttttcaatgttcat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atctgaggaaagaaaacatggaaaaatcctcataaaaattatccacttttcaatgttcat 507
Query: 366 actaccaaactccaaaagccacttttgaggctatgatcatggaattttatatggatcaca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actaccaaactccaaaagccacttttgaggctatgatcatggaattttatatggatcaca 447
Query: 426 agactgctaaaagtcgcagttcttacctaaacaatacgtataggtggggagaaaaaaaat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agactgctaaaagtcgcagttcttacctaaacaatacgtataggtggggagaaaaaaaat 387
Query: 486 catatgagtctacttttaaccaatttttgtatgagcctaattttaaaattacaagaaagc 545
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 catgtgagtctacttttaaccaatttt-gtatgagcctaattttaaaattacaagaaagc 328
Query: 546 taagtttaaaaatcacaggtataaatttaactatccaagtctgatgaagatgaaaacatt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taagtttaaaaatcacaggtataaatttaactatccaagtctgatgaagatgaaaacatt 268
Query: 606 caaaacactagtttttgtatttaagtttctcaaaaaatggacagtagaatcgtacagagc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaaacactagtttttgtatttaagtttctcaaaaaatggacagtagaatcgtacagagc 208
Query: 666 ct 667
||
Sbjct: 207 ct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_l18.g1 MSMg01no526_l18.g1 CHROMAT_FILE:
MSMg01no526_l18.g1 PHD_FILE: MSMg01no526_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:45 2005
(563 letters)
>mm_chr9_53243349_53244313
Length = 965
Score = 1033 bits (534), Expect = 0.0
Identities = 557/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 1 aaagagcataatccatgccctcccctacccccccccctgcactggcccacctcctaaaga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaagagcataatccatgccctcccctaccccccccc-tgcactggcccacctcctaaaga 259
Query: 61 tgttggaagtgtatggatgacttaatcttagaaaacctaacagtgtgagcaggatagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttggaagtgtatggatgacttaatcttagaaaacctaacagtgtgagcaggatagtaa 319
Query: 121 cacactcagaaaaacggtcatcttcagtaagtacagcaatggttcactcaccacagaact 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 cacactcagaaaaacggtcatcttcagtaagtacagcaatggctcactcaccacagaact 379
Query: 181 tcacagtattccaggtatgagaaggaatttctttaacaaaaaaaaagtgacacagatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacagtattccaggtatgagaaggaatttctttaacaaaaaaaaagtgacacagatgct 439
Query: 241 tcacaaaacccctgcaggaaaagggaacacactggcgcctgagccctagccatcagccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaaaacccctgcaggaaaagggaacacactggcgcctgagccctagccatcagccac 499
Query: 301 aggactttcaaacatgactgctctgtactgcaccaagctgaggatgcggccacgagagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggactttcaaacatgactgctctgtactgcaccaagctgaggatgcggccacgagagta 559
Query: 361 aagga---caaaggaacaaaagtagcataaaatctgggaggaaaaatgtttacagcatat 417
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 aaggaggacaaaggaacaaaagtagcataacatctgggaggaaaaatgtttacagcatat 619
Query: 418 aggatcgcctaaaacagtggttctcaatctgtgggtcgcagccctttcacaggtcgcctg 477
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 620 aggatcgcctaaaacagtggttctcaacctgtgagtcgcagccctttcacaggtcgcctg 679
Query: 478 agaccactgcaaaccacaggtaatttacatggtgactcctaacagtagcaagatcacagt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaccactgcaaaccacaggtaatttacatggtgactcctaacagtagcaagatcacagt 739
Query: 538 tctgaagtaggaacaaaagtaatgtt 563
||||||| ||||||||||||||||||
Sbjct: 740 tctgaagcaggaacaaaagtaatgtt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space: 528115
Effective search space used: 528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
