BAC Information

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BAC

Clone NameMSMg01-526L23
Chromosome9 (Build37)
Map Location 11,306,793 - 11,307,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L23.T7 (MSMg01no526_l23.b1)MSMg01-526L23.TJ (MSMg01no526_l23.g1)
ACCAG596265AG596266
length745746
length of high quality
(start - end)		519 (41 - 559)561 (69 - 629)
definitionCHROMAT_FILE: MSMg01no526_l23.b1 PHD_FILE: MSMg01no526_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:46 2005CHROMAT_FILE: MSMg01no526_l23.g1 PHD_FILE: MSMg01no526_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTT
TCTTTATCCATTCCTCTGTTGACGGATATTTGGGTTCTTTCCAGCTTCTG
GCTTTTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATT
ACTTTGTGTAATTTTGGTAGGTCTGCCATTATATATTACTAGGACTTTCT
CGCTTACTGGTTTTAATATTTTTTTCTTGTTTTGTGCATTTGGTATTTTT
ATTATTATGTGATAGGAGGAATTTCTTTTCTGGTCCAATCTATTTGGGGT
TCTATAGGTATCTTGTATGTATATGAGCATCTCATTCTTTATGGAAGTTT
TCTTCTATAATTTTGGTGATGATATTTACTGGCCCTTTAAGTTGGAAATC
TTCACTTTCTTCTATACCTATTATCCTCAGGCTTGGTTTTTCATTGTGTC
CTGTAATTTCTGGCTGTTTTGGGTTAGGAGATTTTTGCATTTTGCATTTT
CTTTGATTGTTGTGTCAATGTTTTCTATGGGATCTTTTGCACCTGAGATT
CTCTCTTCTATCTCATGTATTCTGTTGGTGATGCATGCCTCTGTGATTCC
TTGACTCTCTTCTAGGTTTTTCATCTTCAGGGATGTCTCCCTTTGTGATT
TCCTTATTGGTTCTTTTTCCATTTTTAAGTCTTGGATAGTTTTGT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAGTATCTTTGGATGTACTTGTCTCATAAT
GTTGAGTCAGCTCCTCCATTTATTAATTTATTTTTATTACTTAACCTCAT
AGGTCCTTGGTGTATATATTATGGCTTCTGATTTTGTATTTTTATGGGAT
TGTTCTCTGTGTGAACATGCATGTCATGCTTTTTCTTGGGTTCTTTTTCT
ATTTCATCATATTTCAATTTGTTTGTTTTGCTCTACCTTATTTCACTTTA
TTATTATTTTTTAGATGCCCATTTGTTTTCTAAGGTGAGACAAAATGGTT
ATGGATATAGATGACAGGAGAGATCAAGAGAAACTATGAGGAATAGGAGG
GGCAGAAATTATAATCAAAATATATTTTAAAAAATATAATCTCCATAAAA
GATAAAATTGAAACAGGATCAATTACCAATTACTATAACTATTACCTAAA
TATTGAAAACAAGCAGTTATCAAAATACAGACCCAACTCAACAAGGATCT
CTACTAAGGAATTCAAAATTCAATAACCTTGGGCACTTCTTTAACAATGA
TGGTTGATTGGAAAATAAAACTTTTGAAGCACTTCAAGAATGTTGAAAAA
ATTCACTTCCTAACTGTGTAAGAATAAGTGTCTCTCTAGCCCAGATGTGT
TGCCACTTTATTCAAAACAGGGCGGTTTGTACTTTAAAGTCGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l23.g1 MSMg01no526_l23.g1 CHROMAT_FILE:
MSMg01no526_l23.g1 PHD_FILE: MSMg01no526_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:46 2005
         (561 letters)



>mm_chr9_11306211_11307171
          Length = 961

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 182 tatttcatcatatttcaatttgtttgttttgctctaccttatttcactttattattattt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 961 tatttcatcatatttcaatttgtttgttttgctctaccttatttcactttattatt-ttt 903

                                                                       
Query: 242 tttagatgcccatttgttttctaaggtgagacaaaatggttatggatatagatgacagga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 902 tttagatgcccatttgttttctaaggtgagacaaaatggttatggatatggatgacagga 843

                                                                       
Query: 302 gagatcaagagaaactatgaggaataggaggggcagaaattataatcaaaatatatttta 361
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 842 gagatcaagagaaactatgaggaataggaagggcagaaattataatcaaaatatatttta 783

                                                                       
Query: 362 aaaaatataatctccataaaagataaaattgaaacaggatcaattaccaattactataac 421
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 782 aaaaatataatctcaataaaagataaaattgaaacaggatcaattaccaagtactataac 723

                                                                       
Query: 422 tattacctaaatattgaaaacaagcagttatcaaaatacagacccaactcaacaaggatc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tattacctaaatattgaaaacaagcagttatcaaaatacagacccaactcaacaaggatc 663

                                                                       
Query: 482 tctactaaggaattcaaaattcaataaccttgggcacttctttaacaatgatggttgatt 541
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tctactgaggaattcaaaattcaataaccttgggcacttctttaacaatgatggttgatt 603

                               
Query: 542 ggaaaataaaacttttgaag 561
           ||||||||||||||||||||
Sbjct: 602 ggaaaataaaacttttgaag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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