BAC Information

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BAC

Clone NameMSMg01-526M03
Chromosome9 (Build37)
Map Location 58,018,973 - 58,019,650
singlet/doubletsinglet
Overlap genenone
Upstream gene1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr
Downstream geneIslr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M03.T7 (MSMg01no526_m03.b1)MSMg01-526M03.TJ (MSMg01no526_m03.g1)
ACCAG596273AG596274
length745742
length of high quality
(start - end)		595 (35 - 629)675 (63 - 737)
definitionCHROMAT_FILE: MSMg01no526_m03.b1 PHD_FILE: MSMg01no526_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:47 2005CHROMAT_FILE: MSMg01no526_m03.g1 PHD_FILE: MSMg01no526_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTGG
AATAGTTAGGGGGAAAATTGAGGAACCTGGAGGGTATAGAGACTCCACAA
GAAGACCAACAGAGTCAACTAACCTGAACCCTTGAGGACTCCCAGAGACT
GACCCACTAACCAAAGAGTATACAAGGGTTGGGTCTAGGTCCCCCGCACA
TATGTAGCAGATATGTAGATTGGTCTTCATGCTGGTCTTCCAGCAACTAG
AACAGGGGCTGTCCCTGACTCTGTTACCTGCCTGTAGATCCTGTTCCCCT
AACTGGACTGTCTTGTCTGGACTCAGTGGGAGAGGTTGTAAATACTCCTG
CAGTGACTTGAAATGCCAGGGTGGCTTGATACCCAAGGGGGACCTCTCCC
TCCTCAGAGGTAAAGGTAAAGGGGGAGGGGCCATGTGAAGGGGGACTGGG
AAGGGAGCATTTGGGATGTAAAGTGAATGAAAAAACAAACGGGAAAATGA
CCGATACTCTACTGTATACTCAATCTGTTTGTTTAACCTGCCTTTAAGAA
AAGAATGCACTAGAGCCAGGCGTGGTAGCCCACGCCTTTAATCCCAGCAC
TTGGGAGGCAGAGGCAGGTGAGTTTCTGAGTTCGAGGCCAATCTGGTCTA
CAGAGTGAGTTCCAGGACAGCCAGGTCTACACAGAGAAACCCTGTCTTGA
AAACTAATAAAAAAAAAAAGAATGTAAGAAAAGAATGTCCCACCN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGGGATTCTGTCTACCAGGCTCCTAGACCTGTGGCCAT
TCATTTGGTCTCTCCATAAATGGTGCCTATTCTCTTTGGAGTTAACACTT
GTTTTAGACCACCCTCATTAGTAGACCAGCTGCTTGTCAAGTGGATTTTT
TTTCACATCCATAAATTCATCATTCAAGTTATCCATATCGGACCTGTCCA
TCAAGTTCCTCAAAGGACCCTGGGTGTTATCCAAGGCAAGCCTCTGTCAG
GAAGATGGATGTAAAACATGGGCCACTTGAATGTGTGAAAGTGAAATTGG
ATTTGAAATAAGTTACAGGTTTCCTTCTGACCAAAAAAAAAAAAAAAGAA
TATATATATTGGGGAAAAATATAGGGGAGGGAGAGCCCCTATTCACTATT
GGTGGGAGTGCATACTAGTACAACCATTATGGAAATCAGTATGAGAGTTC
CTCAAAGCATTAAAATTAGAACTACCACATGACCCAGGTATTCTACTTCT
GGGCCTCCAAAGGACTCCATGTCGACCACAGAGACCCTTTTGCATTCATG
TTTATTGTTCCTGTGCTCACAACAACAAGGAAACGGAGCCAGCCTGGTGC
ACACTAACAGATGAATGGATAATGAAATGTAATTAATATATTCCATTGTG
TAATGGAATTTTATTCTGCTGTAAAGAAAATTAAATAATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m03.g1 MSMg01no526_m03.g1 CHROMAT_FILE:
MSMg01no526_m03.g1 PHD_FILE: MSMg01no526_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:47 2005
         (675 letters)



>mm_chr9_58018773_58019847
          Length = 1075

 Score = 1266 bits (655), Expect = 0.0
 Identities = 672/679 (98%), Gaps = 5/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggattctgtctaccaggctcctagacctgtggccattcatttggtctctccataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggattctgtctaccaggctcctagacctgtggccattcatttggtctctccataaatg 260

                                                                       
Query: 61  gtgcctattctctttggagttaacacttgttttagaccaccctcattagtagaccagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcctattctctttggagttaacacttgttttagaccaccctcattagtagaccagctg 320

                                                                       
Query: 121 cttgtcaagtggattttttttcacatccataaattcatcattcaagttatccatatcgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtcaagtggattttttttcacatccataaattcatcattcaagttatccatatcgga 380

                                                                       
Query: 181 cctgtccatcaagttcctcaaaggaccctgggtgttatccaaggcaagcctctgtcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtccatcaagttcctcaaaggaccctgggtgttatccaaggcaagcctctgtcagga 440

                                                                       
Query: 241 agatggatgtaaaacatgggccacttgaatgtgtgaaagtgaaattggatttgaaataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatggatgtaaaacatgggccacttgaatgtgtgaaagtgaaattggatttgaaataag 500

                                                                       
Query: 301 ttacaggtttccttctgaccaaaaaaaaaaaaaaa---gaatatatatattggggaaaaa 357
           |||||||||||||||||||||||||||||||||||   |||||||||||||||  |||||
Sbjct: 501 ttacaggtttccttctgaccaaaaaaaaaaaaaaaaaagaatatatatattgga-aaaaa 559

                                                                       
Query: 358 tataggggagggagagcccctattcactattggtgggagtgcatactagtacaaccatta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tataggggagggagagcccctattcactattggtgggagtgcatactagtacaaccatta 619

                                                                       
Query: 418 tggaaatcagtatgagagttcctcaaagcattaaaattagaactaccacatgacccaggt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggaaatcagtatgagagttcctcaaagcattaaaattagaactaccacatgacccaggt 679

                                                                       
Query: 478 attctacttctgggcctccaaaggactccatgtcgaccacagagacccttttgcattcat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attctacttctgggcctccaaaggactccatgtcgaccacagagacccttttgcattcat 739

                                                                       
Query: 538 gtttattgttcctgtgctcacaacaacaaggaaacggagccagcctggtgcacactaaca 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtttattgttcctgtgctcacaacaacaaggaaacggagccagcctggtgcacactaaca 799

                                                                       
Query: 598 gatgaatggataatgaaatgtaattaatatattccattgtgtaatggaattttattctgc 657
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 800 gatgaatggataatgaaatgtaataaatatattccattgtgtaatggaattttattctgc 859

                              
Query: 658 tgtaaagaaaa-ttaaata 675
           ||||||||||| |||||||
Sbjct: 860 tgtaaagaaaaattaaata 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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