BAC Information

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BAC

Clone NameMSMg01-526O13
Chromosome9 (Build37)
Map Location 38,952,834 - 38,953,258
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27
Downstream geneOlfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526O13.T7 (MSMg01no526_o13.b1)MSMg01-526O13.TJ (MSMg01no526_o13.g1)
ACCAG596387AG596388
length725720
length of high quality
(start - end)		506 (39 - 544)650 (69 - 718)
definitionCHROMAT_FILE: MSMg01no526_o13.b1 PHD_FILE: MSMg01no526_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:58 2005CHROMAT_FILE: MSMg01no526_o13.g1 PHD_FILE: MSMg01no526_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AAGCTCTACATTCTGAGATGAAGAACTGTGAGAAAATAAGAATTACTTAG
AACAGAATGAGTCTTCATATGGGCATATATGGATTAAAGGAGACAAAGTC
ATTAATTTGAGAGAGAGCAGAGTGACCATGAGAGTGGTTAAAGGGAGATG
AGGGACCACTTAAAATTACAGCACTCTTATATTAAATTCTGAAAAATGAA
AGGAGCTGGTGGTGGGGGTAGGGAGAGGTATGGAATGTAGAACATTCAGA
GGATGGACAGGGAGGGGATAAAGTCAGGACTGTAAAAAAAGATGAAATAA
ATTTTTTTAAAGGTATCACTTGTAATTAACAAGAAGTTTATATTTTTAAA
GTAAAGTTTATCAAATATGAAGGAAAATATACATACAATGATGGGACGTC
ATCTATAAGAATAACAATTTGTATAATCTATACTATTTGTATATGTTTTT
GATTCTCATAAACATATAACATATTAGGTACTCAAAAATTAAGTTGCATT
TTCTAATTGTAAAATTATTAAAGGATCCTAGCAAATAAGTAATAATAATG
ACAGGTGGAGGCGAAATATATTTCTATGTATTTTTAATTACTTTTCTGTG
ATTAACAATGTTCACATGATTCCTGCTTACTTGAATTTTTTTTCTTTCAG
TAATTTCTTCAGTGAAATTCTGACN

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTCCTGGATTGTTTT
TGGTTGGATGACTAATAATGACAGCTTCTATGTTTTTAGGGGTTATGGAA
ATGTTTAAATGGTTTATTTGATACTGATTTAACTTTGGTATTTTGTATCT
GCCTAGAAAATTGTCCATTTCTTCCACATTTTTCAGTTGTGTTGAATATA
GTCTTTTGTAGTAGGATCTGATGATTTTTTTAATTTCCTCAATGTCTGTT
GTTTTATTTCCTTTTTTATTCCTGATTTTGTAAATTTGGATACTTCCTCT
GTGGCCTCTGGTTAGGTTGGCTAAGGGTTTATCTATCTTGTTGAATATCT
CAAAGAACCAGCTCCTGGTTTTATTGATTCATTGTATAGTTTTTTTTTTG
TTTGTTTCTGATTACCACAAACTAAGGCTGGACTTCAACAGAAACAACAG
AAAGACCATATACTCATGGAAACTGAACAATTCTCTACTCAATGATAATT
TGTTCAGAGAAGAATTAAGAAAGAAATTAAAGACTTCCAAGAATTCAATG
AAAGTGAAGGGACAACATACCCCAACTTATGGGACAAAATGAAATCAGTG
CTAAGAGGAAAGTTCATAGCACTAAATATTTTCATAATGATATTAGAGAG
ATCTCATATTAGCACTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_o13.b1 MSMg01no526_o13.b1 CHROMAT_FILE:
MSMg01no526_o13.b1 PHD_FILE: MSMg01no526_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:58 2005
         (506 letters)



>mm_chr9_38952834_38953739
          Length = 906

 Score =  700 bits (362), Expect = 0.0
 Identities = 409/426 (96%), Gaps = 5/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaagctctacattctgagatgaagaactgtgagaaaataagaattacttagaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 gaattcttaagcactacattctgagatgaagaactgtgagaaaataagaattactgagaa 366

                                                                       
Query: 65  cagaatgagtcttcatatgggcatatatggattaaaggagacaaagtcattaatttgaga 124
           |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 365 cagaattagtcttcatatgggcatatatggaataaaggagacaaagccattaatttgaga 306

                                                                       
Query: 125 gagagcagagtgaccatgagagtggttaaagggagatgagggaccacttaaaattacagc 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gagagcagagtgaccatgggagtggttaaagggagatgagggaccacttaaaattacagc 246

                                                                       
Query: 185 actcttatattaaattctgaaaaatgaaaggagctggtggtgggggta-gggagaggtat 243
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 245 actctcatattaaattctgaaaaatgaaaggagctggtggtgggggtagggga-aggtat 187

                                                                       
Query: 244 ggaatgtagaacattcagaggatggacagggaggggataaagtcaggactgtaaaaaaag 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 186 ggaatgtagaacattcagaggatggacagggaggggataaagtcaggagtgtaaaaaaag 127

                                                                       
Query: 304 atgaaataaatttttttaaaggtatcacttgt---aattaacaagaagtttatattttta 360
           || ||||||||| |||||||||||||||||||   ||||||||| |||||||||||||||
Sbjct: 126 ataaaataaattcttttaaaggtatcacttgttgtaattaacaaaaagtttatattttta 67

                                                                       
Query: 361 aagtaaagtttatcaaatatgaaggaaaatatacatacaatgatgggacgtcatctataa 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 66  aagtaaagtttatcaaatatgaaggaaaatatacatacaatgatgggatgtcatctataa 7

                 
Query: 421 gaataa 426
           ||||||
Sbjct: 6   gaataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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