Query= MSMg01no527_i09.b1 MSMg01no527_i09.b1 CHROMAT_FILE:
MSMg01no527_i09.b1 PHD_FILE: MSMg01no527_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:47 2005
(244 letters)
>mm_chr9_54830799_54831442
Length = 644
Score = 470 bits (243), Expect = e-137
Identities = 243/243 (100%)
Strand = Plus / Plus
Query: 1 ctctgccttcctagtgttgggattactagggcctccttgccaggccttttacattttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgccttcctagtgttgggattactagggcctccttgccaggccttttacattttgct 260
Query: 61 gtgggttaaacctaggtccttgtgctgtgcagcaaacactcgacaagctgagccatctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggttaaacctaggtccttgtgctgtgcagcaaacactcgacaagctgagccatctcc 320
Query: 121 caaccctcaagacctgctctgcttttccgtttatcttggtatccttaatacctggtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccctcaagacctgctctgcttttccgtttatcttggtatccttaatacctggtttat 380
Query: 181 tataggagactagtggatgtttataaatgagtggatggaataataataatggatattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataggagactagtggatgtttataaatgagtggatggaataataataatggatattttc 440
Query: 241 tca 243
|||
Sbjct: 441 tca 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no527_i09.g1 MSMg01no527_i09.g1 CHROMAT_FILE:
MSMg01no527_i09.g1 PHD_FILE: MSMg01no527_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:47 2005
(603 letters)
>mm_chr9_54976623_54977625
Length = 1003
Score = 984 bits (509), Expect = 0.0
Identities = 560/583 (96%), Gaps = 10/583 (1%)
Strand = Plus / Minus
Query: 31 attgagaacaacaagaacaaaaccctaatgatctttgtacaacataagccacacgatgtc 90
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1003 attgagaacaacaagaacaaaaccctaatgatctttgtacaacagaagccacacgatgtc 944
Query: 91 actccagagatgaggcagcatgtggctttctcgtgaacatcttttgccagcagaccgtga 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 943 actccagagatgaggcagcatgtggctttctcgtgaacatcttttgccagcagattgtga 884
Query: 151 gctaataatctgcttgtagccagcagtgcctgttcattggg----------acacacaca 200
||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 883 gctaataatctgcctgtagccagcagtgcctgttcattgggacacacacacacacacaca 824
Query: 201 cacacacacacacacacactctctaaagggagtcactgaaccaagggaaggaaatggagt 260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cacacacacacacacacacactctaaagggagtcactgaaccaagggaaggaaatggagt 764
Query: 261 cacctacaggcacctcttgggtgatgtaactaagacaggcccaggatgcacatcttcagg 320
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 763 cacctacaggcatctcttgggtgatgtaactaagacaggcccaggctgcacatcttcagg 704
Query: 321 gacctctggcagctccagccatctgtgagagcgaagcagagggataacatgtgtttaacc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gacctctggcagctccagccatctgtgagagcgaagcagagggataacatgtgtttaacc 644
Query: 381 agaagacggtctgggacatggctcggggctgtgtgtacagatggcatgctcagctctgag 440
|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct: 643 agaagacggtctgggacatggcccggggctgtatgtacagatggcgtgctcagctctgag 584
Query: 441 actcggaggtgttgtccaccttaggagctcaatggagtcagacagtatcaccacatcacc 500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 583 actcggaggggttgtccaccttaggagctcaatggagtcagacagtatcaccacatcgcc 524
Query: 501 tgctgctcagggcgtctttgaaaactagttgaaaggccaagtgggctcctgcaatggatg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgctgctcagggcgtctttgaaaactagttgaaaggccaagtgggctcctgcaatggatg 464
Query: 561 tgaacaggctgtgctgtgctgcctttgacccatatctgaggac 603
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgaacgggctgtgctgtgctgcctttgacccatatctgaggac 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
