NNNTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGAGTTTCTGTGTTGCAGCCAATCCCTCTACTTCCCA
ACTTCATATTCCTTTAAATGACTTAGGAGGTAGTGTTCATCTCTAGAGCT
TTGGTGATCTTCATGGCAGTGCCTTGAGGACGCCATGAACATAAACACAC
TATGTGTACAGCATGAGGCTATGCAGTCTCTCCCACACACTGTCTCATCT
GAATGTCCCCATAGCGATCTGGGCACAGTGACATATGCAAAGCCAGGTGT
GCATGCAGCTGGGTGTGAACACACGTCTCCTGGTGGTGACTCGCTCCCTT
AGGCTGTGACTTTGCGTATTTTTGTTTGAGAGAAACTTGCACGACGTACC
AAGAGGTGAAAGGACTTGTTCGAGGTCTCAGATTGAGTCATTGTCCACCA
TGTTATTGGACAGTTACCTTGCTGCCGGAAGTACTATCTAGGGTGTTGCC
CTTAGGGCACTGCTGATGGGGGACCCAAGGTATCTCGAAGCTGAGGCAAG
TGTACCTATTGACACCCTTCTGTGGACTTTGGGTGTCTGGAGGGTTGACT
CTTATCTATTTTGTTATATGCTGTAGCCCAATATCACAGCTTGGTACATG
GCACATGGTAGGTCCTCAATACATAGATATAGATACTTGAAAAAAAAAGG
AAAGTAATGGAAGAGGAGGAAAGTAAGGAGAAAGAAGAATGAAAAGAAA

TTTTGGCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTTAGAGTCTCAGAAGGC
TGAAGTCACAGGCCCTTATCTAAGGTACTGGGAAGGAGCTGGCTTTTGGG
GTCATTTGGGTTATGACTGACTTGAGTTTCTGTGATTGCAGGACTGAGGA
CCCAGTGCCCTTGCTAACTGTCAGCCATGCATAGTCCACGGGCTGCAGTG
TAGCCCATTTAGGCTGTCTGCACAGTCTGTGTCTTAGTCACTGTCCTATT
GCTTTGAAAACAGTCACTGTCCTATTGCTTTGAAGACATACCATGACCAC
GGCAACTTATCAAAGAAAGCATTTAATTGTGGGATTGCTTAAAGTTTCAG
AGGGTTAGTCTATTATCATCATGGCAGGAAATATGGCGATGTGAGACCCC
GACTTAAAGTGTTTCTCCCTGGAAGGTAAAGCCCCTAAATGTTCCCCCAA
GCTTGTTTTCCCTGATCTCTAAATATACAGCCAGAAAGAAGCTCTTTGTT
CTCTATAGCCAGCAAAAAGCCTTTTTGTTTCTATACCTTACAACCAGAGA
TGCGATAATTGTAAAAAGACCTAGCCAGGCACTTGCCTGGCTCCCTGTGC
CAAGGACACGGAGATAAACTCCACAAAGAAGAGCTACAACCCACTCCCCA
CTCCTCATGCCTTGTAATTTTACCAAGGACACCCGCCAGAAGAA

Query= MSMg01no527_j06.b1 MSMg01no527_j06.b1 CHROMAT_FILE:
MSMg01no527_j06.b1 PHD_FILE: MSMg01no527_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:52 2005
         (662 letters)



>mm_chr9_46252945_46254006
          Length = 1062

 Score = 1189 bits (615), Expect = 0.0
 Identities = 648/659 (98%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagtttctgtgttgcagccaatccctctacttcccaacttcatattccttta 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagcttctgtgttgcagccaatccctctacttcccaacttcatattccttta 264

                                                                       
Query: 65  aatgacttaggaggtagtgttcatctctagagctttggtgatcttcatggcagtgccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgacttaggaggtagtgttcatctctagagctttggtgatcttcatggcagtgccttg 324

                                                                       
Query: 125 aggacgccatgaacataaacacactatgtgtacagcatgaggctatgcagtctctcccac 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 325 aggacgccatgaacataaacacactatgtgtatagcatgaggctatgcagtctctcctac 384

                                                                       
Query: 185 acactgtctcatctgaatgtccccatagcgatctgggcacagtgacatatgcaaagccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 acactgtctcatctgaatgtccccatagcgatctgggcacagtgacatacgcaaagccag 444

                                                                       
Query: 245 gtgtgcatgcagctgggtgtgaacacacgtctcctggtggtgactcgctcccttaggctg 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtgcatgcaactgggtgtgaacacacgtctcctggtggtgactcgctcccttaggctg 504

                                                                       
Query: 305 tgactttgcgtatttttgtttgagagaaacttgcacgacgtaccaagaggtgaaaggact 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 tgactttgcgtatttttgtttgagagaaccttgcacgacgtaccaagaggtgaaaggact 564

                                                                       
Query: 365 tgttcgaggtctcagattgagtcattgtccaccatgttattggacagttaccttgctgcc 424
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 565 tgttcgaggtctcagattgagtcattgcccaccatgttattggacaattaccttgctgcc 624

                                                                       
Query: 425 ggaagtactatctagggtgttgcccttagggcactgctgatgggggacccaaggtatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 ggaagtactatctagggtgttgcccttagggcactgctgatgggggacccaaggtatctt 684

                                                                       
Query: 485 gaagctgaggcaagtgtacctattgacacccttctgtggactttgggtgtctggagggtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaagctgaggcaagtgtacctattgacacccttctgtggactttgggtgtctggagggtt 744

                                                                       
Query: 545 gactcttatctattttgttatatgctgtagcccaatatcacagcttggtacatggcacat 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 gactcttatctattttgttatatgctgtagcccaagatcacagcttggtacatggcacat 804

                                                                      
Query: 605 ggtaggtcctcaatacatagatatagatacttgaaaaaaaaa-ggaaagtaatggaaga 662
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 805 ggtaggtcctcaatacatagatatagatacttgaaaaaaaaaaggaaagtaatggaaga 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)