Query= MSMg01no527_j15.b1 MSMg01no527_j15.b1 CHROMAT_FILE:
MSMg01no527_j15.b1 PHD_FILE: MSMg01no527_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:53 2005
(687 letters)
>mm_chr9_101391136_101392222
Length = 1087
Score = 1253 bits (648), Expect = 0.0
Identities = 673/686 (98%), Gaps = 11/686 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttcaggtatgcaggctcgaagtcgtccttgataatgagagagattaaggcatc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcaggcatgcaggctcgaagtcgtccttgataatgagagagattaaggcatc 263
Query: 64 ctcaaatgccctatgctaattttccaagttggaggacaatagtgctatatttataacatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcaaatgccctatgctaattttccaagttggaggacaatagtgctatatttataacatt 323
Query: 124 ctgaggtttagaagccctaaaatgttatagtcaagaagcagttggccatgtgtgaaggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgaggtttagaagccctaaaatgttatagtcaagaagcagttggccatgtgtgaaggca 383
Query: 184 acggccaagtagtcctaaaaatgaagtaacaactggagaggagcactcaggacacctgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acggccaagtagtcctaaaaatgaagtaacaactggagaggagcactcaggacacctgct 443
Query: 244 cgcctaaaaccaaagttctttgatgatgagatcaggtttggcaagtctataaaaggggac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgcctaaaaccaaagttctttgatgatgagatcaggtttggcaagtctataaaaggggac 503
Query: 304 cgtgggaacaatgaatcgatttatacaaagcacttttgacccagggcttaccataagaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtgggaacaatgaatcgatttatacaaagcacttttgacccagggcttaccataagaag 563
Query: 364 aactggagatgctaacttgatgaaggggatggtttgtttagtttacagttttggaggctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aactggagatgctaacttgatgaaggggatggtttgtttagtttacagttttggaggctc 623
Query: 424 gctgtagaatggtcatgtaggtttaagtttctgatgaggttcaaaaaaagcaacaatagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgtagaatggtcatgtaggtttaagtttctgatgaggttcaaaaaaagcaacaatagg 683
Query: 484 aatgttggggcaagtgaccgctagagagagacagagagagagagagagagagagagagag 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgttggggcaagtgaccgctagagagagacagagagagagagagagagagagagaga- 742
Query: 544 agacagagacagagacagagacagagacagagaga--cagagagagacagagagagacag 601
|||||| ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 743 ---cagagagagagacagaga----gacagagagagacagagagagacagagagagacag 795
Query: 602 agagagacagagagagacagagagagacagagacacagacagggctcttaaaaggacata 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 796 agagagacagagagagacagagagagacagagacacagacagggctcttaaaag-acata 854
Query: 662 ttcccgaatgaccccagaacactccc 687
||||||||||||||||||||||||||
Sbjct: 855 ttcccgaatgaccccagaacactccc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_j15.g1 MSMg01no527_j15.g1 CHROMAT_FILE:
MSMg01no527_j15.g1 PHD_FILE: MSMg01no527_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:54 2005
(628 letters)
>mm_chr9_101508527_101509553
Length = 1027
Score = 1160 bits (600), Expect = 0.0
Identities = 621/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 1 ctgcaggggtaagctggctttatccttgctgccagagcacagcacaatcccacctccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctgcaggggtaagctggctttatccttgctgccagagcacagcacaatcccacctccaga 768
Query: 61 catcctcgggaaagacgtcagaagacatttcacagaatcatattgatacatagatttttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 767 catcctcgggaaagacgtcagaagacatttcacagaatcatattgatacataga-ttttt 709
Query: 121 tttttttgcagagggggtccagggttgtaggtgagccccctccctacacgtcatctctgt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttttttgcatagggggtccagggttgtaggtgagccccctccctacacgtcatctctgt 649
Query: 181 ctctgagaaggaagacctatagatcctggaatgagagggaagctgcagtcctgccatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctctgagaaggaagacctatagatcctggaatgagagggaagctgcagtcctgccatctg 589
Query: 241 cacatcagcacaaggagatgcagccaggatctccaccagatgccctgacttcttaatgca 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 588 cacatcagcacaaggagatgcagccaggatctccaccagatgctctgacttcttaatgca 529
Query: 301 caaagagaaaagtgacccaggaaggggaaaggcggtgacgtgactgaagcctctgttcct 360
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 528 caaagagaaaagtgacccaggaaggggaaaggtggtgatgtgactgaagcctctgttcct 469
Query: 361 cgctatacaaccagttctctccagctctgggtgtatctggcaaggcgttcttgtgcaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cgctatacaaccagttctctccagctctgggtgtatctggcaaggcgttcttgtgcaaac 409
Query: 421 cctgtctcaagagcctctgcaaggtggaagacatagaacactagctgggcaatcgagatc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 408 cctgtctcaagagcctctgcaaggtagaagacatagaacactagctgggcaatcgagatc 349
Query: 481 actgagaactgatgtaggttcttaggggactgtatacagtctaccaaactgccataggtc 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 actgagaactgatgtaggttcttaggggactgtatacagtctaccaacctgccataggtc 289
Query: 541 aggaagacagttcctccctcttgcttctgtggcatcctccttcctttatgtgacaacctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aggaagacagttcctccctcttgcttctgtggcatcctccttcctttatgtgacaacctc 229
Query: 601 attctctcacactcctgccatacggttt 628
||||||||||||||||||||||||||||
Sbjct: 228 attctctcacactcctgccatacggttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
