BAC Information

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BAC

Clone NameMSMg01-527K16
Chromosome9 (Build37)
Map Location 109,437,976 - 109,438,611
singlet/doubletsinglet
Overlap geneLOC635668
Upstream geneQrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19
Downstream geneFbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527K16.T7 (MSMg01no527_k16.b1)MSMg01-527K16.TJ (MSMg01no527_k16.g1)
ACCAG596965AG596966
length763762
length of high quality
(start - end)		656 (47 - 702)635 (80 - 714)
definitionCHROMAT_FILE: MSMg01no527_k16.b1 PHD_FILE: MSMg01no527_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:59 2005CHROMAT_FILE: MSMg01no527_k16.g1 PHD_FILE: MSMg01no527_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTG
TCAAATGCTTTCTCTGTGTCTAAGGAGGTGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATATAATGGATTACATTGATGGATATCCATATATTAAATC
ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGTT
TTAATGTGTTCTTGGATTTGGTTAGTGAGAATTTTATTGAGTATTTTTGC
ATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT
CTTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTG
GGTAGAGTATCTTCTACTTCTATTTTGTGGAATAATTTGTGAAGAACTGG
AATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTG
GTCCTGGGCTTTTTTGGTTGAGAGACTATTAATGACTGCTTCTATTTCTT
TAGGGGATATGGGACTGTTTAGATCGTTAAGTTGATTTAACTTTGGTACC
TGGTATCTGTCTAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTCTTGT
TGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAG
GATCTGTTGTTATGTCTCCCTTTTCATTTCTGAATTTGTTAATTAAGATG
CTGTCCCTGTGCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTAGGTGAAGGA
GAGGAAAATTACTGTTTTATTAAAAAGAGAAAAGTAAAAGTGTCATGCTG
ATTTCATTCATGCTGTTTATATTACTAAGTAGAAATCAGAATTTATTTTC
ATTCTAAAATTACCTTCTCCCGTGCATCCACAGGAAGAGCTTATGTCCTG
GACCCTGGAAACTGTGATCCTTTGTCCTTTAAGACAACAACTCAATGAAC
CCAACACTATGATAGAGTGCACACACACATACACCATGGACATATGCATG
CATGCATACTTACACATACACACACACACATACAATGTGGATATATGTGT
ATATATCCACAAACCAGTTTTTCAATTGAGGTCTCTTCTGATTCAGATTG
TAAACAGTTTTGATGACTGCAGACCCCACTGCTGGCTTTTCTGCCACAGG
GTTCCAAGTTAGATTCTGAAGCACTAGCAAAATGAAAGCAACCTAAAGAG
GGGACGACAGGCCACACTACAGGCCCTGAAAGGAGCCAGAGTCCTCTTTG
TGCTTCACTTTCTCAATTTTCTTCTTTATCTCTTATTATGTTCTCTCCTT
TATTATTTTTGAGACACGGTCTCACTCTCTACCCTGACTGATTAGCCTGA
ATCTTCATATATAATGTANGTCTCAAAATTAGAGATCTGTCTGCCTCTGC
CTCCCAGTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_k16.g1 MSMg01no527_k16.g1 CHROMAT_FILE:
MSMg01no527_k16.g1 PHD_FILE: MSMg01no527_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:00 2005
         (635 letters)



>mm_chr9_109437777_109438811
          Length = 1035

 Score = 1183 bits (612), Expect = 0.0
 Identities = 630/636 (99%), Gaps = 1/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcctaggtgaaggagaggaaaattactgttttattaaaaagagaaaagtaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caggccagcctaggtgaaggagaggaaaattactgttttattaaaaagagaaaagtaaaa 259

                                                                       
Query: 61  gtgtcatgctgatttcattcatgctgtttatattactaagtagaaatcagaatttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtcatgctgatttcattcatgctgtttatattactaagtagaaatcagaatttatttt 319

                                                                       
Query: 121 cattctaaaattaccttctcccgtgcatccacaggaagagcttatgtcctggaccctgga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cattctaaaattaccttctcctgtgcatccacaggaagagcttatgtcctggaccctgga 379

                                                                       
Query: 181 aactgtgatcctttgtcctttaagacaacaactcaatgaacccaacactatgatagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aactgtgatcctttgtcctttaagacaacaactcaatgaacccaacactatgatagagtg 439

                                                                       
Query: 241 cacacacacatacaccatggacatatgcatgcatgcatacttacacatacacacacacac 300
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 cacacagacatacaccatggacatatgcatgcatgcatacttacacatacacgcacacac 499

                                                                       
Query: 301 atacaatgtggatatatgtgtatatatccacaaa-ccagtttttcaattgaggtctcttc 359
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 500 atacaatgtggatatatgtgtatatatccacacagccagtttttcaattgaggtctcttc 559

                                                                       
Query: 360 tgattcagattgtaaacagttttgatgactgcagaccccactgctggcttttctgccaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgattcagattgtaaacagttttgatgactgcagaccccactgctggcttttctgccaca 619

                                                                       
Query: 420 gggttccaagttagattctgaagcactagcaaaatgaaagcaacctaaagaggggacgac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggttccaagttagattctgaagcactagcaaaatgaaagcaacctaaagaggggacgac 679

                                                                       
Query: 480 aggccacactacaggccctgaaaggagccagagtcctctttgtgcttcactttctcaatt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggccacactacaggccctgaaaggagccagagtcctctttgtgcttcactttctcaatt 739

                                                                       
Query: 540 ttcttctttatctcttattatgttctctcctttattatttttgagacacggtctcactct 599
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcttttttatctcttattatgttctctcctttattatttttgagacacggtctcactct 799

                                               
Query: 600 ctaccctgactgattagcctgaatcttcatatataa 635
           ||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctaccctgactgattagcctgaatcttcatatataa 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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