Query= MSMg01no528_a06.b1 MSMg01no528_a06.b1 CHROMAT_FILE:
MSMg01no528_a06.b1 PHD_FILE: MSMg01no528_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:30 2005
(644 letters)
>mm_chr9_122257738_122258787
Length = 1050
Score = 752 bits (389), Expect = 0.0
Identities = 448/473 (94%), Gaps = 10/473 (2%)
Strand = Plus / Minus
Query: 5 gaattcagtaacaaaactccaaagtctccaactcctgtggcactttcaagaagttgggct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattcagtaacaatactccaaagtctccaactcctgtggcactttcaagaagttgggct 414
Query: 65 ggcaaaaatgcacccttggaaatcttcatggaccctaggcttgctctagagtgtggctac 124
||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 413 ggcaagaatgtacccttggaagtcttcatggaccctaggcttgctctagtgtgtggctac 354
Query: 125 tgagcactgaaaacaaacaaaaagcacaccattaatctaaagctggttctgcgtggaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 353 tgagcactgaaaacaaacaaaaagcacaccattaatctaaagctggttctgtgtggaaac 294
Query: 185 tgatggagctgtgcccagggatatggaatttgatgaccttccctaagtc------cactc 238
||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 293 tgatggagctgtgtgcagggatatggaatttgatgaccttccctaagtccggggacactc 234
Query: 239 gatttggcttcaccttgatgctaattgtc----ttagggttttactgctgtgaacagaca 294
|||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct: 233 aatttggcttcaccttgatgctaattgtcttagttagggttttactgttgtgaacagaga 174
Query: 295 ccatgaccaaggcaactcttgtaaggacagcttataattggggctggcttacaggttcag 354
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 173 ccatgaccaaggcaactcttgtaaggacaggttataattggggctggcttacaggttcag 114
Query: 355 aggttcaatcccttatcatcaaggtgggaacatggcagtatccaggcaggcatggtgcag 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 113 aggttcaatcccttatcatcaaggtgggaacatggcagcatccaggcaggcatggtgcag 54
Query: 415 aaggagctgagagttctacatcttcatctgaaggctgctagcagaatactgac 467
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 53 gaggagctgagagttctgcatcttcatctgaaggctgctagcagaatactgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1050
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1040
Effective search space: 659360
Effective search space used: 659360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_a06.g1 MSMg01no528_a06.g1 CHROMAT_FILE:
MSMg01no528_a06.g1 PHD_FILE: MSMg01no528_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:30 2005
(648 letters)
>mm_chr9_122111740_122112787
Length = 1048
Score = 1193 bits (617), Expect = 0.0
Identities = 646/667 (96%), Gaps = 19/667 (2%)
Strand = Plus / Plus
Query: 1 tttagaggagaaataaacaatgtctcctgggagaagggggtaggcacagaagtcagcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttagaggagaaataaacaatgtctcctgggagaagggggtaggcacagaagtcagcatt 241
Query: 61 gtgctagatttgagc----tgtaaccagaagacctagaaattagcagctcccagccagac 116
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgctagatttgagcatgctgtaaccagaagacctagaaattagcagctcccagccagac 301
Query: 117 tcacattaacagtgatatggagtgaccagattttggagtatgtaatggccttgaccttgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcacattaacagtgatatggagtgaccagattttggagtatgtaatggccttgaccttgg 361
Query: 177 gaacactggcagatgcttaggcaaacagaagctaaaacagccctggtcagatgttttcat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaacactggcagatgcttaggcaaacagaagctaaaacagccctggtcagatgttttcat 421
Query: 237 gtgctgtatgtgagttaagaccctggctatcacctacaaaggataaaacaacagagagga 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 gtgctgtatgtgagttaagaccctggctatcacctacaaaggataaaacaacagtgagga 481
Query: 297 ggagctgggctgtacccttatcctgttagtgataaggagaagaaaacctcatcctagtgt 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 482 ggagctgggctgtacccttatcctgttagtgataaggagaaaaaaacctcatcctagtgt 541
Query: 357 tacctgagaaacaacctagtgtatgaaaaggaaccttctgcggtttgctgctggagccac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacctgagaaacaacctagtgtatgaaaaggaaccttctgcggtttgctgctggagccac 601
Query: 417 cacccctacccccacccattctcacctaacaaacctgcacccttgtttgtgccccctgga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cacccctacccccacccattctcacctaacaaacctgcacccttgtttgtgccccctgga 661
Query: 477 gtcttggtaggaatgggtttaagtaacaaaacaaaacaaa---------------gttcc 521
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 662 gtcttggtaggaatgggtttaagtaacaaaacaaaacaaaacaaaacaaaacaaagttcc 721
Query: 522 tcaggcctggcttccctcaggtgcagagcatctggaagggacatcagcctgcccatatct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcaggcctggcttccctcaggtgcagagcatctggaagggacatcagcctgcccatatct 781
Query: 582 ttagccttgtcagcacacacaccttttataagggacaaagccagggctgcacagagaaac 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttagccttgtcagcacacacaccttttataagggacaaagccagggctgcacagagaaac 841
Query: 642 cctgtct 648
|||||||
Sbjct: 842 cctgtct 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
