Query= MSMg01no528_j22.b1 MSMg01no528_j22.b1 CHROMAT_FILE:
MSMg01no528_j22.b1 PHD_FILE: MSMg01no528_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:16 2005
(659 letters)
>mm_chr9_78773735_78774796
Length = 1062
Score = 1212 bits (627), Expect = 0.0
Identities = 649/657 (98%), Gaps = 3/657 (0%)
Strand = Plus / Minus
Query: 6 gaattctcagccacctctgatcagtctttctggacatcaatattggtgctggcttattaa 65
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 862 gaattctcagccacctctgatcagtctttctggccatcaatattggtgctggcttattaa 803
Query: 66 ttcctggccatccttttctccttgaacaaatttgcccaattatttataggcttggcgctc 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 802 ttcctggccatccttttctccttgaacaaatttgcccaattatttataggcttggcactc 743
Query: 126 catatatttgttgtatttaaaatatttcacagaatgagcttcagtgttaagaccaatggg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 catatatttgttgtatttaaaatatttcacagaatgagcttcagtgttaagaccaatggg 683
Query: 186 gg--aaaaaaaagtataaaaccacccgaactaaaacttctgctttaatgtcctcatttgt 243
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 682 ggaaaaaaaaaagtataaaaccacccgaactaaaacttctactttaatgtcctcatttgt 623
Query: 244 attcttggctgactctggtcataagaaagttgctttcctgacctctgtcagtcagctctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attcttggctgactctggtcataagaaagttgctttcctgacctctgtcagtcagctctt 563
Query: 304 ttgggagaatgttcaggaaagcactgtatggtggttgtgaatgcttcccaagccctgccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgggagaatgttcaggaaagcactgtatggtggttgtgaatgcttcccaagccctgccc 503
Query: 364 cttatgaagacatttcctgcatgatcggaaaactgcaatgaagacagtgcctgctatgtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttatgaagacatttcctgcatgatcggaaaactgcaatgaagacagtgcctgctatgtt 443
Query: 424 cttcaataataaagttggagaactccgtgttttcttttcattgctacctggggagtttct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttcaataataaagttggagaactccgtgttttcttttcattgctacctggggagtttct 383
Query: 484 gtgagagtcaacttcag-aaaaaaacaggttttcatcaagtagaaactgtgttttccttg 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgagagtcaacttcagaaaaaaaacaggttttcatcaagtagaaactgtgttttccttg 323
Query: 543 ccaggaatcttaatgcatacatcaccaaaattggatctaaagataaatgcggggtccagc 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 ccaggaatcttaatgcatacatcaccaaaattggatctaaagataaatgtggggtccagc 263
Query: 603 tccacaagactctatctaaacattctctatttatcacgggcttccagtgttgctgca 659
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 262 tccacaagactctatctaaacattctctatttatcaccggcttccagtgttgctgca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1062
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1052
Effective search space: 682748
Effective search space used: 682748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_j22.g1 MSMg01no528_j22.g1 CHROMAT_FILE:
MSMg01no528_j22.g1 PHD_FILE: MSMg01no528_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:16 2005
(606 letters)
>mm_chr9_78596705_78597711
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 603/609 (99%), Gaps = 3/609 (0%)
Strand = Plus / Plus
Query: 1 cctgagtttgtggaaatttccatagtccttagaaacacatccatccaggaatgctttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cctgagtttgtggaaatttccatagtccttagaaacacatccatccaggaatgctttcac 258
Query: 61 ttacttaaagtctcagtcacttacagctgtctctcactggcttatcttaaggaccagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttacttaaagtctcagtcacttacagctgtctctcactggcttatcttaaggaccagcac 318
Query: 121 atcacagtgtttgggaagcagtaagattgtcactttgaagtgtaaatcttttcaagccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcacagtgtttgggaagcagtaagattgtcactttgaagtgtaaatcttttcaagccaa 378
Query: 181 cccctctgtttccctctgtttcaagggagtattcccaattaataggtcatacttcattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccctctgtttccctctgtttcaagggagtattcccaattaataggtcatacttcattaa 438
Query: 241 gggattcacataaaatttaacttgattaacattaagtttgggtcataaaatattaagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggattcacataaaatttaacttgattaacattaagtttgggtcataaaatattaagctt 498
Query: 301 tttt--ctgtttatttacacattacctcacaacatttacttttctaactttattactttg 358
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttttctgtttatttacacattacctcacaacatttacttttctaactttattactttg 558
Query: 359 ttcagttacttatttaaagtctaagtctcattacatagcccaggctggcttcagactcat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcagttacttatttaaagtctaagtctcattacatagcccaggctggcttcagactcat 618
Query: 419 gaacttcctttcttaccattacaggtatataccgtgcggtgtttggctatattgaaagtt 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaacttcctgtcttaccattacaggtatataccgtgcggtgtttggctatattgaaagtt 678
Query: 479 ttagtaactacttttcttgaggaaaatttctttcttgagattaattttcttgggagcatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttagtaactacttttcttgaggaaaatttctttcttgagattaattttcttgggagcatt 738
Query: 539 tttactaaaacgataataagtatctttcaaagtatgtgtcatggagtgtctgagaa-aaa 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 tttactaaaacgataataaatatctttcaaagtatgtgtcatggagtgtctgagattaaa 798
Query: 598 ctctttgat 606
|||||||||
Sbjct: 799 ctctttgat 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
