BAC Information

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BAC

Clone NameMSMg01-528M07
Chromosome9 (Build37)
Map Location 60,208,761 - 60,383,989
singlet/doubletdoublet
Overlap geneThsd4, LOC100039792, EG384942
Upstream geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528M07.T7 (MSMg01no528_m07.b1)MSMg01-528M07.TJ (MSMg01no528_m07.g1)
ACCAG597807AG597808
length736745
length of high quality
(start - end)		642 (54 - 695)595 (83 - 677)
definitionCHROMAT_FILE: MSMg01no528_m07.b1 PHD_FILE: MSMg01no528_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:28 2005CHROMAT_FILE: MSMg01no528_m07.g1 PHD_FILE: MSMg01no528_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:28 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(60,383,350 - 60,383,989)(60,208,761 - 60,209,348)
sequence
CGCGCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATATTGCGACTTGGTGAACACAGTCTCTTTCCGGGG
GTTGGAAGTCAGGTAGCTGTAGGTCTTGGAGATGGCATCAAAGGTGGACT
TGGTAAAGTTGCCCAGGGTGGCAGTACAGCCCCTGGTTGATGTGTAGCTG
TTATCCACACCAGCCATCATTAGCAGCTTCTTGGCTACAGGAGCAGAGTT
AGTGTCTTCGAAACAGAGCCATAGTGGCCTGCCATTTGCACAGACTTATG
GGGCTTGCTAGTCTTGTCCTCCCAATAGCTGCTCTGCACAAGGACAATGG
AGAGCTTGGCCAAGATGCTGGCCACTGGAATGGCAGTGCCTACCTCCTGC
AGCACTTAGCACCAACACCAATGTGAGCAGTATCGATGACGCCTTAAACC
TGGACCTCCAGTCAGCCCAGGATATTTCTACTCTGGCAGGATCTTGAGAA
CCTCATCCTTTAGGGATTTGCCCAGGAAAAAGCCAATAATCTCAGAATCC
TTACTGGGCAGGGAGAACAGGAACATCTCCAGGGATTTGATCGTCATGAT
AAGGCCATCCTTTGCTACATATGGCTGGAGCCATGAGTCCCTCCATGTGT
ACTCCTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGTGGGGGGTGTCTGG
TTGGGTGATATTATTGTTCTTCCTATGAATTTGCAA

NCCCCGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGTTTAAGGAAGTC
ACACATTAACATCTGGACAGTTGAAAGATGACAGGAATAAGTTCCTGATT
AAAGTCATAGAAAACACAGATAGCTGCATACAATTATGAACAGTTCAGGG
AAAAAGTTCGTCCAACAGAGGGAAATTTCCCTTACCCCATTTTACTGATA
GGAATGCTAAGGCCTCCATCCTGAAGCCAACAGACTGAAGAGTGGACACT
TTAATGATTATCTCACATGGCACCATGCAAAAGGACAGTATACATGGTCA
CAATGGATCGCGATAAACTAGAACCTTTGCTATCAAACAACTTTAGAGTC
ATCACTCAAAATCAAATTCCTGGAGGTAATAAACCAATCTTTAACTACTG
AATGAGCCTCACTTATATATGCGAATACTTTTGAAATGGCATGCAGATAA
TCTGAAAATTTCCTAACGCTCTGGGAAGGTAACTCCCCTCAACAAATTGT
ATCCCAAACCACTGCAGGCACTGACTTCCTATAAATCAAATTGAACCATA
TTTATTCAAGGACTTTGCTAGGGTGAATATACAGTAAATATTTAATAAAT
GAAAACTCACTGTTGCAATCTGTATAGTCATTCAATAATTTATCTGTTTT
GGAAATTTGGATTTATAGTCAGACTCTTGACATTCCTCAAGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_m07.b1 MSMg01no528_m07.b1 CHROMAT_FILE:
MSMg01no528_m07.b1 PHD_FILE: MSMg01no528_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:28 2005
         (642 letters)



>mm_chr9_60383257_60384298
          Length = 1042

 Score = 1152 bits (596), Expect = 0.0
 Identities = 629/640 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcctgatattgcgacttggtgaacacagtctctttccgggggttggaagtcaggta 62
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattcctgataaggggacttggtgaacacagtctctttccgggggttggaagtcaggta 674

                                                                       
Query: 63  gctgtaggtcttggagatggcatcaaaggtggacttggtaaagttgcccagggtggcagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gctgtaggtcttggagatggcatcaaaggtggacttggtaaagttgcccagggtggcagt 614

                                                                       
Query: 123 acagcccctggttgatgtgtagctgttatccacaccagccatcattagcagcttcttggc 182
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 613 acagcccctggctgatgtgtagctgttatccacaccagccatcattagtagcttcttggc 554

                                                                       
Query: 183 tacaggagcagagttagtgtcttcgaaacagagccatagtggcctgccatttgcacagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tacaggagcagagttagtgtcttcgaaacagagccatagtggcctgccatttgcacagac 494

                                                                       
Query: 243 ttatggggcttgctagtcttgtcctcccaatagctgctctgcacaaggacaatggagagc 302
           |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct: 493 ttatggggcttgctagtcttgtccccccaatagccgctctgcacaaggacaacggagagc 434

                                                                       
Query: 303 ttggccaagatgctggccactggaatggcagtgcctacctcctgcagcacttagcaccaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 433 ttggccaagatgctggccactggaatggcagtgcctacctcctgcagtacttagcaccaa 374

                                                                       
Query: 363 caccaatgtgagcagtatcgatgacgccttaaacctggacctccagtcagcccaggatat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caccaatgtgagcagtatcgatgacgccttaaacctggacctccagtcagcccaggatat 314

                                                                       
Query: 423 ttctactctggcaggatcttgagaacctcatcctttagggatttgcccaggaaaaagcca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttctactctggcaggatcttgagaacctcatcctttagggatttgcccaggaaaaagcca 254

                                                                       
Query: 483 ataatctcagaatccttactgggcagggagaacaggaacatctccagggatttgatcgtc 542
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 ataatctcagaatccttagtgggcagggagaacaggaacatctccagggatttgatcatc 194

                                                                       
Query: 543 atgataaggccatcctttgctacatatggctggagccatgagtccctccatgtgtactcc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgataaggccatcctttgctacatatggctggagccatgagtccctccatgtgtactcc 134

                                                   
Query: 603 ttggttggtggtttagtccctgggagctctgtggggggtg 642
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttggttggtggtttagtccctgggagctctgtggggggtg 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_m07.g1 MSMg01no528_m07.g1 CHROMAT_FILE:
MSMg01no528_m07.g1 PHD_FILE: MSMg01no528_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:28 2005
         (595 letters)



>mm_chr9_60208561_60209555
          Length = 995

 Score = 1106 bits (572), Expect = 0.0
 Identities = 584/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagtttaaggaagtcacacattaacatctggacagttgaaagatgacaggaataagt 60
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 aaggagtttaaggaagtcacacattaacatctgtatagttgaaagatgacaggaataagt 260

                                                                       
Query: 61  tcctgattaaagtcatagaaaacacagatagctgcatacaattatgaacagttcagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgattaaagtcatagaaaacacagatagctgcatacaattatgaacagttcagggaa 320

                                                                       
Query: 121 aaagttcgtccaacagagggaaatttcccttaccccattttactgataggaatgctaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagttcgtccaacagagggaaatttcccttaccccattttactgataggaatgctaagg 380

                                                                       
Query: 181 cctccatcctgaagccaacagactgaagagtggacactttaatgattatctcacatggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccatcctgaagccaacagactgaagagtggacactttaatgattatctcacatggca 440

                                                                       
Query: 241 ccatgcaaaaggacagtatacatggtcacaatggatcgcgataaactagaacctttgcta 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ccatgcaaaaggacagtatacatggtcacaatggatcgagataaactagaacctttgcta 500

                                                                       
Query: 301 tcaaacaactttagagtcatcactcaaaatcaaattcctggaggtaataaaccaatcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaacaactttagagtcatcactcaaaatcaaattcctggaggtaataaaccaatcttt 560

                                                                       
Query: 361 aactactgaatgagcctcacttatatatgcgaatacttttgaaatggcatgcagataatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactactgaatgagcctcacttatatatgcgaatacttttgaaatggcatgcagataatc 620

                                                                       
Query: 421 tgaaaatttcctaacgctctgggaaggtaactcccctcaacaaattgtatcccaaaccac 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tgaaaatttcctaacgctctgggaaggtaactcccttcaacaaattgtatcccaaaccac 680

                                                                       
Query: 481 tgcaggcactgacttcctataaatcaaattgaaccatatttattcaaggactttgctagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcaggcactgacttcctataaatcaaattgaaccatatttattcaaggactttgctagg 740

                                                           
Query: 541 gtgaatatacagtaaatatttaataaatgaaaactcactgttgcaatc 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgaatatacagtaaatatttaataaatgaaaactcactgttgcaatc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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