Query= MSMg01no528_p10.b1 MSMg01no528_p10.b1 CHROMAT_FILE:
MSMg01no528_p10.b1 PHD_FILE: MSMg01no528_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:44 2005
(697 letters)
>mm_chr9_93971595_93972691
Length = 1097
Score = 1131 bits (585), Expect = 0.0
Identities = 609/617 (98%)
Strand = Plus / Minus
Query: 81 tctgctcacccagatagcacactgatgttactacatcaagaaacaattttcaagtttagc 140
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1097 tctgctcacccagatagcacactgatgttactacatcaagaaacaattctcaagtttagc 1038
Query: 141 ttagtgaatcaatgtgattatttggtttatgtgcaagagtgtgtgtgaggggtgacttac 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ttagtgaatcaatgtgattatttggtttatgtgcaagagtgtgtgtgaggggtgacttac 978
Query: 201 agctgtggtcatggacaactcaaaggtagcaacatcactgaaaaccccagtccagtctgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 agctgtggtcatggacaactcaaaggtagcaacatcactgaaaaccccagtccagtctgg 918
Query: 261 gtgatgactcatggaagctgtgtgtccctggcaggagtttcagctcctttgtagcacagc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gtgatgactcatggaagctgtgtgtccctggcaggagtttcagctcctttgtagcacagc 858
Query: 321 ttcagcacagcttggactttagtatgtaatcgagaaggagcgtagcatgttgagatcttg 380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 857 ttcagcacagcttggactttagtatgtaatcgagaaggagcctagcatgttgagatcttg 798
Query: 381 caggctctttccttgtatctctttttcagttcacgtgttgacgcttggggattccatgag 440
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 797 caggctctttccttgtatctctttttcagttcacgtgttgactcttggggatttcatgag 738
Query: 441 ataatacagaatctgagacttggctatttaactagaaggtctatatactcagctgctggt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ataatacagaatctgagacttggctatttaactagaaggtctatatactcagctgctggt 678
Query: 501 tctgagccaccaactggaaaatcagtgatacgtcaacatcattgggtcaatcccctttcc 560
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 677 tctgagccaccaactggaaaatcagtgataagtcaacatcattgggtcaatcccctttcc 618
Query: 561 catcaaacatggtcttttcctagtctccatgtccactgaacaagttcagtggttccatca 620
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 catcaaacatggtcttttcctagtctccatgtccactgaacaagttcaatggttccatca 558
Query: 621 tctgtatggttgtgtgggatagaaatgtatgttgtttgcaatattgtatactttgtatat 680
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 557 tctgtatggttgtgtgggatagagatgtatgttgtttgcagtattgtatactttgtatat 498
Query: 681 gatacattgcaaagtcc 697
|||||||||||||||||
Sbjct: 497 gatacattgcaaagtcc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_p10.g1 MSMg01no528_p10.g1 CHROMAT_FILE:
MSMg01no528_p10.g1 PHD_FILE: MSMg01no528_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:44 2005
(685 letters)
>mm_chr9_93869853_93870937
Length = 1085
Score = 1274 bits (659), Expect = 0.0
Identities = 671/675 (99%)
Strand = Plus / Plus
Query: 1 tcagatggggaagaagaagaaaggtcagaaccaaagtgagagaacattgtgagagagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagatggggaagaagaagaaaggtcagaaccaaagtgagagaacattgtgagagagact 260
Query: 61 tggtcttccattaatcacatgaacaatggaagggacacctagataagagatggaaaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcttccattaatcacatgaacaatggaagggacacctagataagagatggaaaaaga 320
Query: 121 atttagaagctactttagaaaggtaaagatcagaattgcctctaaatctcccaggaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagaagctactttagaaaggtaaagatcagaattgcctctaaatctcccaggaagaa 380
Query: 181 atatagccttgctgacactttgactttaacccagagaaacatatttagaatttctgacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatagccttgctgacactttgactttaacccagagaaacatatttagaatttctgacat 440
Query: 241 ttataagattggtaattcatgttgttttaagatacagtttgtgatcattttaacagcaga 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttataagattggtaattcatgttgttttaagatacagtttgtgaccattttaacagcaga 500
Query: 301 aacagaaagcaaacactgttttagggatgaaccagaaacaaccaaattaaaatgttcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagaaagcaaacactgttttagggatgaaccagaaacaaccaaattaaaatgttcaaa 560
Query: 361 tcacatagttcatgaggacaatttaaacagtaagaagcaagaggaaagagatgaaacaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tcacatagttcatgaggacaatttaaacagtaagaagcaagaggaaagagatgaaacaca 620
Query: 421 ttagaaaggaacttcaatcttgatacacagtgttcatgtattctgtccctttccctgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagaaaggaacttcaatcttgatacacagtgttcatgtattctgtccctttccctgatg 680
Query: 481 ggtcaaccacctaaccacttcagcctgtgactaacagacattaaggtgagatttaaaggc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtcaaccacctaaccatttcagcctgtgactaacagacattaaggtgagatttaaaggc 740
Query: 541 atgaccatgactcacttatgataactgtggctgacaccacctgtagttcaccagttcata 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaccatgactcacttatgacaactgtggctgacaccacctgtagttcaccagttcata 800
Query: 601 ataattatttgtggcaagtgtgatgccattaattaagacagcacacacacacacacacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataattatttgtggcaagtgtgatgccattaattaagacagcacacacacacacacacac 860
Query: 661 acacacacacacaca 675
|||||||||||||||
Sbjct: 861 acacacacacacaca 875
Score = 81.9 bits (42), Expect = 2e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 cacacacacacacacacacacacacacacacacacacacaca 896
Score = 81.9 bits (42), Expect = 2e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cacacacacacacacacacacacacacacacacacacacaca 898
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacac 682
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 cacacacacacacacacacacacacacacacacacacacac 895
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 643 acacacacacacacacacacacacacacacacacacacaca 683
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 acacacacacacacacacacacacacacacacacacacaca 900
Score = 76.1 bits (39), Expect = 9e-18
Identities = 43/45 (95%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 641 gcacacacacacac--acacacacacacacacacacacacacaca 683
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 956 gcacacacacacacaaacacacacacacacacacacacacacaca 912
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 945 cacaaacacacacacacacacacacacacacacacacacaca 904
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 947 cacacaaacacacacacacacacacacacacacacacacaca 906
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 949 cacacacaaacacacacacacacacacacacacacacacaca 908
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 642 cacacacacacacacacacacacacacacacacacacacaca 683
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 951 cacacacacaaacacacacacacacacacacacacacacaca 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 12
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
