BAC Information

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BAC

Clone NameMSMg01-529E20
Chromosome9 (Build37)
Map Location 40,717,968 - 40,885,484
singlet/doubletdoublet
Overlap gene4931429I11Rik, Crtam, 2810457I06Rik
Upstream geneOlfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529E20.T7 (MSMg01no529_e20.b1)MSMg01-529E20.TJ (MSMg01no529_e20.g1)
ACCAG598214AG598215
length783769
length of high quality
(start - end)		647 (46 - 692)670 (73 - 742)
definitionCHROMAT_FILE: MSMg01no529_e20.b1 PHD_FILE: MSMg01no529_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:12 2005CHROMAT_FILE: MSMg01no529_e20.g1 PHD_FILE: MSMg01no529_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,885,024 - 40,885,484)(40,717,968 - 40,718,637)
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTGGCAGGTGCCATTTCAATTCTGCCTTGCTAGAATGTTGACT
CTCAGCAGAACCGTGAGACCCTAGGGGTTTTCAGGGGTGGGGGTGGGGGC
ATGCTTCTTCGCCTGAGTTTTCAGATTCTAACCCAAACTCTTCTGTCAAC
CTCCCCTCTCCTCGGACATACACACCTGCGATCTGTCAGTAAGACTCGTG
CCCTTCTGTACCCTGTTAGGAAGGTGGAATAACGTTAGGGTTGGAAATCT
TAGGGGTGTGCTAGTTACATTTCTGTTGTTGTGGTAGAGGACCCTGTCAG
AGCTTCGATGAAAGAGAAAGGGTTTATTCAGCTTACAATTCCAGATTGCA
GCCCTTTGTAATGGGGAAGTTAAGGCCAGAACTTACAACAGCTAGTCACA
TCACAACTAGTCAGGAGAGGGGTGAAGTGAAGCCATGTGTGCCTGATGCT
CGGGTAGCTCTCTCTCCTCTTAACAATCCAGGACTGAAAACCATCGAATG
GTCTTGCCCACTTTCAGGCTTGATATTGCCATATACATTAAGGCAGCCAG
GACAGCACCCCAACACCCCACCTCACCTCCAATGTGTCCCCAGGCCACCC
CTGATGTAGCTAACCCCTCAGTGAGATTCACTTCTAGGATGATTCTTGGT
GTCATGTCAACCTGGAAACTGGTTTTACACAAGTATCACTAAGGAAGATA
CACTGGCACCAAGGGTGTGTGTGTGTGTGTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTCAAAAGCTGCTGTTTTCAACCATA
GGAAAGTTCTCTTCTGAGAGGCTGTGTACCTTGGGCCCTGGGGATCTATA
CGCTCTGGAGTGATCAGGCAGCTGCTGTGCTGTCAGAGGTGTGGGTTGCA
AAGGCTGATTGCATGTCTCCATGGAAATGATAGGAATGATGCCTGCTTCC
CAGTCTGGTCTATCTGTCTTGGCTTATTTGAAAAACACTTGAAAGTGGTA
CAAGCAGTACTTTAGAATGGAACAACCATGCAATGACGTTTTTCTGGGAG
AAGTGACCCGTGAACCCCAGAACTCAGGCCTCCCTGTCTACACGGGAAGT
GGGGTCTTCCGGTGCCAGGCTAATAGGAGCTCTTTCCATGTCCCAGAATC
ATGAGCTAAATAAACTTCATCATAAAATAACCTGCCTTCGGTATTTTATT
ATAATAGTGAAAAACCAAACATTATTCTGCCCTAGAAGCAAGTGGTCTTC
CTGAGAATTAAAAAGGTAGCTTTTAACAAGATATGAAGAGACTAAACTGT
TCAAAAGAGCTCACTGCTTTTTGACCCAAACTCTAGATTAAGAATTCAGC
GAANACCGAGTGGTTTGGATAATTTGCTGTCGAAGATGAGTTGAGATGTG
CACCAAGAGGCATGTTTGATGCCGAGGAACCAGTGGTGGAGGGTGAGAGA
CTGTGGCTTACACTCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_e20.b1 MSMg01no529_e20.b1 CHROMAT_FILE:
MSMg01no529_e20.b1 PHD_FILE: MSMg01no529_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:12 2005
         (647 letters)



>mm_chr9_40885024_40886070
          Length = 1047

 Score =  884 bits (457), Expect = 0.0
 Identities = 460/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctggcaggtgccatttcaattctgccttgctagaatgttgactctcagcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaattctcctggcaggtgccatttcaattctgccttgctagaatgttgactctcagcaga 402

                                                                       
Query: 65  accgtgagaccctaggggttttcaggggtgggggtgggggcatgcttcttcgcctgagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 accgtgagaccctaggggttttcaggggtgggggtgggggcatgcttcttcgcctgagtt 342

                                                                       
Query: 125 ttcagattctaacccaaactcttctgtcaacctcccctctcctcggacatacacacctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttcagattctaacccaaactcttctgtcaacctcccctctcctcggacatacacacctgc 282

                                                                       
Query: 185 gatctgtcagtaagactcgtgcccttctgtaccctgttaggaaggtggaataacgttagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gatctgtcagtaagactcgtgcccttctgtaccctgttaggaaggtggaataacgttagg 222

                                                                       
Query: 245 gttggaaatcttaggggtgtgctagttacatttctgttgttgtggtagaggaccctgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 221 gttggaaatcttaggggtgtgctagttacatttctgttgttgtggtagaggaccctgaca 162

                                                                       
Query: 305 gagcttcgatgaaagagaaagggtttattcagcttacaattccagattgcagccctttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gagcttcgatgaaagagaaagggtttattcagcttacaattccagattgcagccctttgt 102

                                                                       
Query: 365 aatggggaagttaaggccagaacttacaacagctagtcacatcacaactagtcaggagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aatggggaagttaaggccagaacttacaacagctagtcacatcacaactagtcaggagag 42

                                                    
Query: 425 gggtgaagtgaagccatgtgtgcctgatgctcgggtagctc 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gggtgaagtgaagccatgtgtgcctgatgctcgggtagctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_e20.g1 MSMg01no529_e20.g1 CHROMAT_FILE:
MSMg01no529_e20.g1 PHD_FILE: MSMg01no529_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:12 2005
         (670 letters)



>mm_chr9_40717768_40718837
          Length = 1070

 Score = 1290 bits (667), Expect = 0.0
 Identities = 669/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcaaaagctgctgttttcaaccataggaaagttctcttctgagaggctgtgtacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcaaaagctgctgttttcaaccataggaaagttctcttctgagaggctgtgtacctt 260

                                                                       
Query: 61  gggccctggggatctatacgctctggagtgatcaggcagctgctgtgctgtcagaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggccctggggatctatacgctctggagtgatcaggcagctgctgtgctgtcagaggtgt 320

                                                                       
Query: 121 gggttgcaaaggctgattgcatgtctccatggaaatgataggaatgatgcctgcttccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttgcaaaggctgattgcatgtctccatggaaatgataggaatgatgcctgcttccca 380

                                                                       
Query: 181 gtctggtctatctgtcttggcttatttgaaaaacacttgaaagtggtacaagcagtactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctggtctatctgtcttggcttatttgaaaaacacttgaaagtggtacaagcagtactt 440

                                                                       
Query: 241 tagaatggaacaaccatgcaatgacgtttttctgggagaagtgacccgtgaaccccagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaatggaacaaccatgcaatgacgtttttctgggagaagtgacccgtgaaccccagaa 500

                                                                       
Query: 301 ctcaggcctccctgtctacacgggaagtggggtcttccggtgccaggctaataggagctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaggcctccctgtctacacgggaagtggggtcttccggtgccaggctaataggagctc 560

                                                                       
Query: 361 tttccatgtcccagaatcatgagctaaataaacttcatcataaaataacctgccttcggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccatgtcccagaatcatgagctaaataaacttcatcataaaataacctgccttcggt 620

                                                                       
Query: 421 attttattataatagtgaaaaaccaaacattattctgccctagaagcaagtggtcttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttattataatagtgaaaaaccaaacattattctgccctagaagcaagtggtcttcct 680

                                                                       
Query: 481 gagaattaaaaaggtagcttttaacaagatatgaagagactaaactgttcaaaagagctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaattaaaaaggtagcttttaacaagatatgaagagactaaactgttcaaaagagctc 740

                                                                       
Query: 541 actgctttttgacccaaactctagattaagaattcagcgaanaccgagtggtttggataa 600
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 actgctttttgacccaaactctagattaagaattcagcgaaaaccgagtggtttggataa 800

                                                                       
Query: 601 tttgctgtcgaagatgagttgagatgtgcaccaagaggcatgtttgatgccgaggaacca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgctgtcgaagatgagttgagatgtgcaccaagaggcatgtttgatgccgaggaacca 860

                     
Query: 661 gtggtggagg 670
           ||||||||||
Sbjct: 861 gtggtggagg 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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