Query= MSMg01no530_f16.b1 MSMg01no530_f16.b1 CHROMAT_FILE:
MSMg01no530_f16.b1 PHD_FILE: MSMg01no530_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:38 2005
(711 letters)
>mm_chr9_73333054_73334164
Length = 1111
Score = 1125 bits (582), Expect = 0.0
Identities = 669/704 (95%), Gaps = 14/704 (1%)
Strand = Plus / Plus
Query: 16 ggaattccccttcatgccaacaaagcgttcccagctcctcagccaataatgcatactcac 75
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattccccttcatgcaaacaaagcgttcccagctcctcagccaataatgcatactcac 273
Query: 76 cctgaaaacccttactcactctccaaggttttataatctttgttaatcccccagctcccc 135
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cccgaaaacccttactc----tccaaggttttataatctttgttaatcccccagctcccc 329
Query: 136 aataaagagagctttttcactgaaaactgtgtctggagaaggctgtttctctgagactca 195
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 330 aataaagagagctttttcacttaaaaccctgtctggagaaggctgtttctctgagactca 389
Query: 196 tgctgactgagatcctatctaacccactggcccagcccggctaaggtttgttccttccag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgctgactgagatcctatctaacccactggcccagcccggctaaggtttgttccttccag 449
Query: 256 gtga-gc-----ccagtgcgcaacagtgcctggatatccagaggagaaaagcagacctgg 309
||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttgaagtttgttccagtgcgcaacagtgcctggatatccagaggagaaaagcagacctgg 509
Query: 310 gccagcaccccttctccatcctaataacactttaccgattgcattgttctctgtactctc 369
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gccagcaccccttctccgtcctaataacactttaccgattgcattgttctctgtactctc 569
Query: 370 ttgtgacacaccagagccctgggaactaatcaaaactgactgcatgctgaactccagtcc 429
|||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 570 ttgtgacacagcagagccctgggaactaataaaaactgactgcatgctgaattccagtcc 629
Query: 430 ccatgaagctca--gcataggacaagagataacaagtgttactgccatacctaagcttag 487
||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 630 ccatggagc--atggcataggacaagagataccaagtgttactgccatacctaagcttag 687
Query: 488 aatgtacacatttgcatcatctacaaggtacgcaagtctactatggtcacagtgagtcaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aatgtacacatttgcatcatctacaaggtacgcaagtctactatggtcacagtgagtcaa 747
Query: 548 gggctgaacatacctagaagagtgcttgccatttagggtcagataagtaaattcaagcca 607
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 748 gggttgaacatacctagaagagtgcttgccgtttagggtcagataagtgaattcaagcca 807
Query: 608 tcgatgccttcttaagcacctgtgactcacagttttcttatttgtaaactgaagagaatg 667
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 808 tcgatgccttcttaagcacctgtgactcacagttttcttatttgtaaacttaagagaatg 867
Query: 668 ccaaccacttcctctacccacatttattaacatatcatttataa 711
|||||||||||||||||||||| | |||||| | ||||||||||
Sbjct: 868 ccaaccacttcctctacccacactaattaacctgtcatttataa 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_f16.g1 MSMg01no530_f16.g1 CHROMAT_FILE:
MSMg01no530_f16.g1 PHD_FILE: MSMg01no530_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:38 2005
(669 letters)
>mm_chr9_73499113_73500181
Length = 1069
Score = 1201 bits (621), Expect = 0.0
Identities = 657/669 (98%)
Strand = Plus / Minus
Query: 1 ctagatctgagaagaaatcctagattaaaatggttttggctataaaaatatgttattggc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 869 ctagatctgagaagaaatcctagattaaaatggtttgggctataaaaatatattattggc 810
Query: 61 tattaaagacatggaatgaggaaatactagctcctgtttatttacaggtacattaccaag 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 809 tattaaagacatggaatgaggaaatactagctcctgtttattgacaggtacattaccaag 750
Query: 121 ttaggaaagttgttatttcccttttatgattttagttttttcataatttccccaatttat 180
|| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 749 ttgggaaagttgttatttcccttttatgattttaattttttcataattttcctaatttat 690
Query: 181 tattttactaagggttggacaaataataagaaaaggtgaccctcagccagttctggtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tattttactaagggttggacaaataataagaaaaggtgaccctcagccagttctggtggc 630
Query: 241 tcaagagagcctaagattttgctgaacctgaggtaaagggaaaagaagcaaccatgttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcaagagagcctaagattttgctgaacctgaggtaaagggaaaagaagcaaccatgttgt 570
Query: 301 gagggctcctggttcctattgtaagtttttcctgatcttgatactgaagtctctggttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagggctcctggttcctattgtaagtttttcctgatcttgatactgaagtctctggttac 510
Query: 361 ttggggctcttcagttagtactgactgtgttctcttctgctgtttctctgggtgatgaga 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 509 ttggggctcttcagttagtactgactgtgttctcttctgctgcttctctgggtgatgaga 450
Query: 421 accaccgggtaaaaagagtttctcacaagcacattgctcttccatgacttcacgtgtcga 480
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aacactgggtaaaaagagtttctcacaagcacattgctcttccatgacttcacgtgtcga 390
Query: 481 gcttgcccgtgtcactgatagagccatttcttcacatttatagtattcaatagtttagtg 540
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 gcttgcccgtgtcactgatagagccatcccttcacatttatagtattcaatagtttagtg 330
Query: 541 tgtttatacattacttccattgtgttctatatacaaataggagagagacagtgacatgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtttatacattacttccattgtgttctatatacaaataggagagagacagtgacatgat 270
Query: 601 gacatattatacatactcagtgtcaaaagcgacctgtactcaagccattgactgacacca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacatattatacatactcagtgtcaaaagcgacctgtactcaagccattgactgacacca 210
Query: 661 gtcagtgta 669
|||||||||
Sbjct: 209 gtcagtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
