Query= MSMg01no531_d22.b1 MSMg01no531_d22.b1 CHROMAT_FILE:
MSMg01no531_d22.b1 PHD_FILE: MSMg01no531_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
(574 letters)
>mm_chr9_122582761_122583735
Length = 975
Score = 791 bits (409), Expect = 0.0
Identities = 468/507 (92%), Gaps = 33/507 (6%)
Strand = Plus / Minus
Query: 100 cagataacaacaggaagtgaagtccgtgggaatccatcaa-cctgaggaactgtgggatg 158
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 975 cagataacaacaggaagtgaagtccgtgggaatccatcaaccctgaggaactgtgggatg 916
Query: 159 aagggctccctaaaggtttgttggctcctagtctcccccactcatgctacttgatgcctc 218
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 915 aagggctccctaaagggttgttggctcctagtctcccccactcatgctactt-atgcctc 857
Query: 219 ctcaaaccatggatg------------------------------cacacacacacacac 248
||||||||||||||| |||||||||||||||
Sbjct: 856 ctcaaaccatggatgcacacatacacacacacacacacacacacacacacacacacacac 797
Query: 249 acacacacacacacacacacaaagctacttcctccccggagatctagtagggctctgctg 308
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 796 acacacacacacacacacacaaagctacttcctccctggagatctagtagggctctgctg 737
Query: 309 aaagctacctccctgccacccgaaacttcctgtgagacacactctattttagggacatgg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 736 aaagctacctccctgccacccgaaacttcctgtgagacacactctattttagggacaagg 677
Query: 369 -cctgggtaataagagttgctgtctgcacatatctctagaaatccacaacctttcaccag 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccctgggtaataagagttgctgtctgcacatatctctagaaatccacaacctttcaccag 617
Query: 428 cccagggagacaaatcaacaaggggaggatgaacacatatcacaaacacagttcacagct 487
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 616 cccagggagacaaatcaacaagaggagaacgaacacatatcacaaacacagttcacagct 557
Query: 488 gggacaacgctgactgcaagatcatcacctacaggaccccttccctgcctcagaatttcc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gggacaacgctgactgcaagatcatcacctacaggaccccttccctgcctcagaatttcc 497
Query: 548 agggaagtcctagactttctgaaaggc 574
|||||||||||||||||||||||||||
Sbjct: 496 agggaagtcctagactttctgaaaggc 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_d22.g1 MSMg01no531_d22.g1 CHROMAT_FILE:
MSMg01no531_d22.g1 PHD_FILE: MSMg01no531_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
(524 letters)
>mm_chr9_122376023_122376946
Length = 924
Score = 940 bits (486), Expect = 0.0
Identities = 507/514 (98%)
Strand = Plus / Plus
Query: 1 ttctttgacaaatgggtaatttccacgtgttttaaaaagcatatttggggctacccagga 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ttctttgacaaatgggtaatttccacgtgtttaaaaaagcatatttggggctacccagga 260
Query: 61 catctttttgttgctgatttctagtttaatttcaagctggttagtttaaaaaaaaatcag 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 catctttttgttgctgatttctagtttaatttcaagctggttagttttaaaaaaaatcat 320
Query: 121 ctattagctaaatctttgtatatcttggttcttttatatttcaggaaatgatgtggtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattagctaaatctttgtatatcttggttcttttatatttcaggaaatgatgtggtgtg 380
Query: 181 ctgctgatatgtgtgtgcgagtttgttagtatatgttaattacatgttaattatgtatga 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctgatatgtgtgtgcgtgtttgttagtatatgttaattacatgttaattatgtatga 440
Query: 241 tagtgggtttggtgataaaattttatgcaagtatgtaatgcatttggccgtatccatcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgggtttggtgataaaattttatgcaagtatgtaatgcatttggccgtatccatcgc 500
Query: 301 tcatttctgtcctcttcccatctccttggtcctagtttaggggatattttatgcactctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatttctgtcctcttcccatctccttggtcctagtttaggggatattttatgcactctt 560
Query: 361 gaacagaatattctagtaatgtcagcaaagccagaatggctggtggtgcctctgaatttt 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gaacagaatattctagtaatgtcagcaaagccaaaatggctggtggtgcctctgaatttt 620
Query: 421 ccatggtccatggactatgtccactgggaaaaaagagttggtttgctataagccaatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ccatggtccatggactatgtccactgggaaaaaagagttggtttgctatcagccaatttg 680
Query: 481 ccgactcctcttcaactctgtctgagctcagtct 514
|| |||||||||||||||||||||||||||||||
Sbjct: 681 ccaactcctcttcaactctgtctgagctcagtct 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
