Query= MSMg01no531_k04.b1 MSMg01no531_k04.b1 CHROMAT_FILE:
MSMg01no531_k04.b1 PHD_FILE: MSMg01no531_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:19 2005
(662 letters)
>mm_chr9_96518175_96519236
Length = 1062
Score = 1195 bits (618), Expect = 0.0
Identities = 646/658 (98%), Gaps = 7/658 (1%)
Strand = Plus / Plus
Query: 6 gaattcatagaatct-gtcataaactggctcaagtgacacaaaacatgatgtcctcagag 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatagaatctggt-ataaactggctcaagtgacacaaaacatgatgtcctcagag 264
Query: 65 atgtcaacctaaacagaagcttttagcttttacatagtgagagctatgacagtatgtaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtcaacctaaacagaagcttttagcttttacatagtgagagctatgacagtatgtaaa 324
Query: 125 cgtcaccatatattcacactaacaacaaaaaacaaagaaggatcaaacatacttaaaaat 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 cgtcaccatatattcacactaacaacaaaaaacaaagaaggatcatacatacttaaaaat 384
Query: 185 atactgtaggagcaagagagatggctcagcagtttaaagtacttgttgctactgcagaga 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atactgtgggagcaagagagatggctcagcagtttaaagtacttgttgctactgcagaga 444
Query: 245 actaagtttggttcctaacagccagatgatggctcacaataacccctaactccaagtcta 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 actaagtttggttcctaacagccggatgatggctcacaataacccctaactccaagtcta 504
Query: 305 ggggatatggtgttccttgaggctatgaggtacacatgtagtgtaaacacggacatgcag 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 ggggatatggtgttccttgaggctatgaggtacacatgta-----aacacggacatgcag 559
Query: 365 acaaagctttcatacactgaagataaaaaaataaatctttaaaaaactttaaaatatttg 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaaagctttcatacactgacgataaaaaaataaatctttaaaaaactttaaaatatttg 619
Query: 425 aaaatatggactcaggttgataagcttagataaaattaaaatgctacctaactatacatc 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaatacggactcaggttgataagcttagataaaattaaaatgctacctaactatacatc 679
Query: 485 agacaaccctaggtatgatatgataatatatagtaaagtcttcaaaatgttctcctaatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agacaaccctaggtatgatatgataatatatagtaaagtcttcaaaatgttctcctaatt 739
Query: 545 ttaatttcaacttctgcaccagggaattctaaaacaagtagtactgacaatacagcaagt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttaatttcaacttctgcaccagggaattctaaaacaagtagtactgacaatacagcaagt 799
Query: 605 taaatgagtgcattttaagacagacatctgagtttcaatataagctttgtactttaga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taaatgagtgcattttaagacagacatctgagtttcaatataagctttgtactttaga 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_k04.g1 MSMg01no531_k04.g1 CHROMAT_FILE:
MSMg01no531_k04.g1 PHD_FILE: MSMg01no531_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:19 2005
(567 letters)
>mm_chr9_96667418_96668384
Length = 967
Score = 644 bits (333), Expect = 0.0
Identities = 348/353 (98%)
Strand = Plus / Minus
Query: 1 taggtttggaaatacagaaaaaattcttgatcttacattctaaatctagggacaataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taggtttggaaatacagaaaaaattcttgatcttacattctaaatctagggacaataatt 294
Query: 61 aagcatgttagagagcaagtaatacagaaataaatcaggaggaaatgaaggaactaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagcatgttagagagcaagtaatacagaaataaatcaggaggaaatgaaggaactaggaa 234
Query: 121 gggtgtaatggctattctttttttttcttttagatttttaaaaaattttgtgtgtataag 180
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 233 gggtgtgatggctattctttttttttcttttagattttaaaaaaattgtgtgtgtataag 174
Query: 181 tgctttacctacatgtatgtctgttcaccacatacatgcctggtacctaaggaagtggtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 173 tgctttacctacatgtatgtctgttcaccacatacatgcctggtacctaaggaaatggtg 114
Query: 241 agcctccaagtgggtactggaaatagaagctgtctcctttgtaagaataagtgctcttaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 agcctccatgtgggtactggaaatagaagctgtctcctttgtaagaataagtgctcttaa 54
Query: 301 ccactgagccaactctccagccccatgatggctgttcttgattatcaacttga 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ccactgagccaactctccagccccatgatggctgttcttgattatcaacttga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
