Query= MSMg01no532_a07.b1 MSMg01no532_a07.b1 CHROMAT_FILE:
MSMg01no532_a07.b1 PHD_FILE: MSMg01no532_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:50 2005
(553 letters)
>mm_chr9_123031380_123032326
Length = 947
Score = 930 bits (481), Expect = 0.0
Identities = 533/557 (95%), Gaps = 15/557 (2%)
Strand = Plus / Plus
Query: 1 ttcttacaaggcttagctagtgtggttggccctggaagcagagtcacgcctgtactcttg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttagaaggcttagctagtgtggttggccctggaagcagagtcacgcctgtactcttg 260
Query: 61 ggtgtgccttgctttctatttctacttagcaaatcttatcctaatcttcacgattaagcc 120
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggtgtgccttgctttcta------cttagcaaatcttatcctaatcttcatgattaagcc 314
Query: 121 tatattaaaataaacttccagtacttctttactataaataaaaataaaaaagagggctgg 180
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tacattaaaataaacctccagtacttctttactataaataaaaataaaaaagagggctgg 374
Query: 181 agggccgggcgtggtggcgcacgcctttaatcccagcactcggaaggcagaggcaggcgg 240
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 375 agggccgggcgtggtggcgcactcctttaatcccagcactcgggaggcagaggcaggcgg 434
Query: 241 atttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctata 494
Query: 301 cagagaaatcctgtttcgggggggaaaaaaaa--gtgggggggg--ctggaggtgtatct 356
||||||||||||||||||||| |||||||| |||||||||| || |||||||||||
Sbjct: 495 cagagaaatcctgtttcgggg---aaaaaaaatagtgggggggggcctagaggtgtatct 551
Query: 357 cagtaaacgagtgcctgcctagaatccacagtgaggagctgaggtgtatgggtcagtaga 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagtagacgagtgcctgcctagaatccacagtgaggagctgaggtgtatgggtcagtaga 611
Query: 417 atgattgccttgcatgtaggaggtgctgggttccgtccttagtcacacaaaaaaaaatct 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 612 atgattgccttgcatgtaggaggtgctgggttctgtccttagtcacacaaaaaaa--tct 669
Query: 477 tcagaggagacagaagcagggatgggtccatagcacaagtaaatccattccttgtcctcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcagaggagacagaagcagggatgggtccatagcacaagtaaatccattccttgtcctcc 729
Query: 537 cttatcagtgtttctgg 553
|||||||||||||||||
Sbjct: 730 cttatcagtgtttctgg 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 947
Length adjustment: 10
Effective length of query: 543
Effective length of database: 937
Effective search space: 508791
Effective search space used: 508791
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_a07.g1 MSMg01no532_a07.g1 CHROMAT_FILE:
MSMg01no532_a07.g1 PHD_FILE: MSMg01no532_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:50 2005
(622 letters)
>mm_chr9_123074815_123075836
Length = 1022
Score = 1203 bits (622), Expect = 0.0
Identities = 622/622 (100%)
Strand = Plus / Minus
Query: 1 atttctactccaaacataaaagaaagggctgtgaaaggcattagtgacatgtctggcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 atttctactccaaacataaaagaaagggctgtgaaaggcattagtgacatgtctggcttc 923
Query: 61 ttgtttgggccctgattagatgttcatttgaagacaattgctaagttgctaagatactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ttgtttgggccctgattagatgttcatttgaagacaattgctaagttgctaagatactta 863
Query: 121 attttgtcttaactttactgagctgtaaggtacccagataccttgggggtaagtgctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 attttgtcttaactttactgagctgtaaggtacccagataccttgggggtaagtgctgtg 803
Query: 181 actgtgccaatatttaaaagctcacgaggaagccagccaggtaaaggtgtaaatgcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actgtgccaatatttaaaagctcacgaggaagccagccaggtaaaggtgtaaatgcctat 743
Query: 241 agtcccaagacttgggaggctacggaaggagctcaagtccagcctaagttatataagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agtcccaagacttgggaggctacggaaggagctcaagtccagcctaagttatataagact 683
Query: 301 caattttaggagaggggacaaataatttccctcctctaatccttatatgaatgacaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caattttaggagaggggacaaataatttccctcctctaatccttatatgaatgacaagaa 623
Query: 361 gctcttgttctaggaagaagctgtccagtgttagctgcctgcactgctttcttcgggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gctcttgttctaggaagaagctgtccagtgttagctgcctgcactgctttcttcgggctg 563
Query: 421 ttcatggctgccatctttttccccattttaaggttctgattcatgacctttgttcctgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcatggctgccatctttttccccattttaaggttctgattcatgacctttgttcctgag 503
Query: 481 caagcttggcttccctggaggtgtcactcaaaagacacaatgagcacatgaccaagaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caagcttggcttccctggaggtgtcactcaaaagacacaatgagcacatgaccaagaagt 443
Query: 541 aaatttgttgttttggcttattcattattattcattccttcatcctgtcaggcagtgaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatttgttgttttggcttattcattattattcattccttcatcctgtcaggcagtgaat 383
Query: 601 tatttactgagtgctaactagg 622
||||||||||||||||||||||
Sbjct: 382 tatttactgagtgctaactagg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
