Query= MSMg01no532_g20.b1 MSMg01no532_g20.b1 CHROMAT_FILE:
MSMg01no532_g20.b1 PHD_FILE: MSMg01no532_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:21 2005
(677 letters)
>mm_chr9_31036779_31037855
Length = 1077
Score = 1193 bits (617), Expect = 0.0
Identities = 663/685 (96%), Gaps = 14/685 (2%)
Strand = Plus / Plus
Query: 5 gaattctatccttatgccccacagggtaggagattatcaattctgacaggttgacctctg 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctatccttagggcccacagggtaggagattatcaattctgacaggttgacctctg 254
Query: 65 acctccacacactcaca----ctcacgcaaagcaagataagtgcaatacttacttttatt 120
||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 255 acctccacacactcacatacacgcacgcaaagcaagataagtgcaatacttactttcatt 314
Query: 121 tgttttgttttgtttt-------gttttttt-caagacagggtttctctgtatagctctg 172
|||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct: 315 tgttttgttttgttttttgttttgtttttttgc--gacagggtttctctgtatagctctg 372
Query: 173 gctgtcctggaactcactttgtagaccaggctggcctccagctcagaaatccgcccgcct 232
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 373 gctgtcctggaactcactttgtagaccaggctggcctccagcttagaaatccgcctgcct 432
Query: 233 ctgcctcctaagtgctgggattaaaggcgtgcaccaccatgtccggctaatacttacttt 292
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgcctcctaaatgctgggattaaaggcgtgcaccaccatgtccggctaatacttacttt 492
Query: 293 taattaaaaggggagtctccgtagtagagtccttgcttagcatgtgtgaggagaaaaata 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taattaaaaggggagtctccgtagtagagtccttgcttagcatgtgtgaggagaaaaata 552
Query: 353 aaaataggagaatatatacatttatatctgtgtataaataaggttaagtctgaaagtata 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 553 aaaataggagaatatatacatttatatctgtgtataaataaggttaagtctgaaagtaca 612
Query: 413 cacacaaaatcaataatcatgattttctatgaaaggggtggggactaaacaaggaggtgt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cacacaaaatcaataatcatgattttctatgaaaggggtggggactaaacaaggaggtgt 672
Query: 473 agaaagagaaagtgatgttttcttttatagctttctatactttttgacatctcttattgt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agaaagagaaagtgatgttttcttttatagctttctatactttttgacatctcttattgt 732
Query: 533 gctatttattttaaaaaccaaatgaataacattaaatgaagagcataaaagagccaatat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gctatttattttaaaaaccaaatgaataacattaaatgaagagcataaaagagccaatat 792
Query: 593 ggagaagaatgaggcgagagatgagggtttacattgtatccatacttaggagtggtcctc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ggagaagaatgaggcgagagatgagggtttacattgtatccatacttaggagtggtcctc 852
Query: 653 agtaactcgtcttatgggcatctcc 677
|||||||||||||||||||||||||
Sbjct: 853 agtaactcgtcttatgggcatctcc 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_g20.g1 MSMg01no532_g20.g1 CHROMAT_FILE:
MSMg01no532_g20.g1 PHD_FILE: MSMg01no532_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:21 2005
(595 letters)
>mm_chr9_31168888_31169882
Length = 995
Score = 874 bits (452), Expect = 0.0
Identities = 452/452 (100%)
Strand = Plus / Minus
Query: 144 gtgagattccaggagacttaagactcataagttatactttaagtaagagcaggatgctgg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 gtgagattccaggagacttaagactcataagttatactttaagtaagagcaggatgctgg 936
Query: 204 gcgtggtggcacacgcctttatcccagtacttgggaggcagaggcaggcagatttctgag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gcgtggtggcacacgcctttatcccagtacttgggaggcagaggcaggcagatttctgag 876
Query: 264 ttcgaggccagcctggtctatagagtgagttccaagacagccagggctatagagagaaac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ttcgaggccagcctggtctatagagtgagttccaagacagccagggctatagagagaaac 816
Query: 324 cctgtctcgaaaaaccaaaaaaaaaaaaaaaagtaagagcaggattaatgaaaagcaatc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cctgtctcgaaaaaccaaaaaaaaaaaaaaaagtaagagcaggattaatgaaaagcaatc 756
Query: 384 ataactctaaaactctatattgttttccaagggcaatctacaaagatattaaaacaatgg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ataactctaaaactctatattgttttccaagggcaatctacaaagatattaaaacaatgg 696
Query: 444 atttcagttaaattgctggaaaggcaaatgagtggaattgcttacagtagctaagcttaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atttcagttaaattgctggaaaggcaaatgagtggaattgcttacagtagctaagcttaa 636
Query: 504 accaaggaaggtgaaacagcttgtccagtcacaaaagtaaccatttgtgtttggaaacac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 accaaggaaggtgaaacagcttgtccagtcacaaaagtaaccatttgtgtttggaaacac 576
Query: 564 agcccagaagtcatggctctcattgagcagcc 595
||||||||||||||||||||||||||||||||
Sbjct: 575 agcccagaagtcatggctctcattgagcagcc 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
