Query= MSMg01no532_i12.b1 MSMg01no532_i12.b1 CHROMAT_FILE:
MSMg01no532_i12.b1 PHD_FILE: MSMg01no532_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:28 2005
(635 letters)
>mm_chr9_116978356_116979390
Length = 1035
Score = 893 bits (462), Expect = 0.0
Identities = 536/568 (94%), Gaps = 15/568 (2%)
Strand = Plus / Minus
Query: 17 gaattcctttctttttacgtgaattttaataatcggg------------tgtatgaatac 64
|||||||||||||| | ||||||||||||||| ||| |||||||||||
Sbjct: 567 gaattcctttctttagaagtgaattttaataattgggtgtatgttttgctgtatgaatac 508
Query: 65 tggggagtttgggtcctttaagggttaaatggttctttagccttttgactggccagaggg 124
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 507 tggggagtttgggtcctttaaggactaaatggttctttagccttttgattggccagaggg 448
Query: 125 cagacttttatctgggcgtgttcattgtatgtagtgatcaaggaaatcaaggaaagagat 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 447 cagacttttatctgggcgtgttcattgtatgtagtgatcaaggaaatcaagggaagagat 388
Query: 185 gcagctaaatggacctgaatataaaatatgagcaacaccacttaaaagtggaatgaactt 244
|||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcagttaaatggacctgaatgt-aaatatgagcaacaccacttaaaagtggaatgaactt 329
Query: 245 ggttggacgagcaactaatgtttcagatttcaga-ttttttttttcatctttaaaaatct 303
|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 328 ggttggacaagcaactaatgttccagatttcagatttttttttttcatctttaaaaatct 269
Query: 304 cagccctgtgagtgagggccgagattgctgctcatgggtagagtgcttgccaagcaaaca 363
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 cagccctgtgagtgagggctgagattgctgctcatgggtagagcacttgccaagcaaaca 209
Query: 364 ctttgttctggcttcctccccagcctcttacaaatggggtgtggagcaccacacctgtaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctttgttctggcttcctccccagcctcttacaaatggggtgtggagcaccacacctgtaa 149
Query: 424 tactagcccttgggaggtggaggccaaaggatcagaaactaaagctcatccttggttaca 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tcctagcccttgggaggtggaggccaaaggatcagaaactaaagctcatccttggttaca 89
Query: 484 tagcaagtttaaggacagcgtgggctacaggagaccccttttc-aaacacaacagtggtc 542
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 88 tagcaagtttaagggcagcgtgggctacaggagaccccttttcaaaacacaacagtggtc 29
Query: 543 agatcaacttactctgtatgtgtgagaa 570
||||||||||||||||||||||||||||
Sbjct: 28 agatcaacttactctgtatgtgtgagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_i12.g1 MSMg01no532_i12.g1 CHROMAT_FILE:
MSMg01no532_i12.g1 PHD_FILE: MSMg01no532_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:28 2005
(583 letters)
>mm_chr9_116834281_116835263
Length = 983
Score = 1114 bits (576), Expect = 0.0
Identities = 582/584 (99%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 1 catatgaaattttggaaggaagcaggccagatatttcaggcctgtggttttgtgtttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgaaattttggaaggaagcaggccagatatttcaggcctgtggttttgtgtttttt 260
Query: 61 gggtgttttgttttgttttgttttttaatagccctgaaattctgagagttcaggtgactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgttttgttttgttttgttttttaatagccctgaaattctgagagttcaggtgactt 320
Query: 121 tttccaaattaatcggccaacatcccactgacgggcctgctctgcaccgactttgtcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaaattaatcggccaacatcccactgacgggcctgctctgcaccgactttgtcagg 380
Query: 181 acagcagctccatgttcctccagaatcaagtgttgctgtgactgtgcacaggcctgtgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcagctccatgttcctccagaatcaagtgttgctgtgactgtgcacaggcctgtgta 440
Query: 241 ggtgactagcacacagaacactggggtgacagtgtgctcattactttcctatagctgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgactagcacacagaacactggggtgacagtgtgctcattactttcctatagctgtgg 500
Query: 301 taaggcaccctgaccaaggtaacttgtacaaggacgggttcatttgagcttacagtttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaggcaccctgaccaaggtaacttgtacaaggacgggttcatttgagcttacagtttcc 560
Query: 361 aagggtaagagtccattcagcacccttgtggtgcgcaagtatggcagcagacctgcttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggtaagagtccattcagcacccttgtggtgcgcaagtatggcagcagacctgcttac 620
Query: 421 atccagagcagcagagagttcacctcttaaaatgcaagcagagaagctgggagcaggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccagagcagcagagagttcacctcttaaaatgcaagcagagaagctgggagcaggaag 680
Query: 481 cggagagattagcctgtggctttgaaacttcaaaggctggccccagacacacttctaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 cggagagattagcctgtggctttgaaacttcaaaggctggccccagacacacttctagta 740
Query: 541 aggcctttccctctctgcttctccaa-cactgtgaccaaccggg 583
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 aggcctttccctctctgcttctccaaacactgtgaccaaccggg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
