BAC Information

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BAC

Clone NameMSMg01-533J23
Chromosome9 (Build37)
Map Location 113,953,956 - 113,954,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2
Downstream geneSusd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533J23.T7 (MSMg01no533_j23.b1)MSMg01-533J23.TJ (MSMg01no533_j23.g1)
ACCAG601501AG601502
length723759
length of high quality
(start - end)
590 (53 - 642)488 (78 - 565)
definitionCHROMAT_FILE: MSMg01no533_j23.b1 PHD_FILE: MSMg01no533_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:52 2005CHROMAT_FILE: MSMg01no533_j23.g1 PHD_FILE: MSMg01no533_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
GATCCGCGGAATTCCAAGACAGCTAGGGCTGTACAGAGAAACCCTGTCTT
GAAAAACAAACAGGTCCCTTCTGGTCCCCGCCAGCACCGGGGTAGTTTGG
GAATGGAGTCTGCAGACACCCACAAGGTACCCACAGGACCCTCCACGGGA
TCTTAAGACCTCTGGTGAGTGGAACACAGCTGCTGCTCCAATCCAATCGT
GCAGGACCTGAGACTGCATTAATTAGAGAAGCAGAAAACCCGGCCTGATC
AGGGGCACAAGTCCCCTCTGGTCCCCACCAGCACCAGGGTAGCTTGGGCG
CAGAGCCTGCAGATACCCTCAAGGTACCCACAGGACCCTCCACGGGATCT
TAAGACCTCTGGTGAGTGGAATACAGCTGCTGCTCCAATCCAATCGTGCA
GGACCTGGGTCTGCATTAATTAGGGAAGCAGAAAACCCAGCCTGATCGGG
GCAAAAGTCCCTTCCAGTCCACCCGAGCACCGGAGTACCTTGGGCGCGGA
GTCTGCGGGACACCTGCTAGGTACCCACAGGAGCCTCAACGGGATCTTAA
GACCTCTATGAGTGGATCACAACTTCTGCCAGGAGGCAGGTTCGAACACC
AGATATCTAGGCACCTTCCCTGCAAGAGGAGAGCTTGCCTGCATAGAGTA
CTATGAACACTGAAACTCAGGAG
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAGCTTTGTAAAACCATGT
CTATACATCTATGTATAACTATATAGACATACACGTGCATATATGATATG
AAAGTGGGAAGGGGAGGGGAAGGGAGGAGACTAACAGGGGAGGCAGAAGG
GAGAAGAGAAGAAAAGGAGGGGACTGGAGGGAGGAGGTGGTCAAAGTACC
TGACAGGTCAGAGAGAACGCTGCGGCGTGACCCCTTGTGATGAGAATATG
CCAGTGAAAGGAAAGCCATCGCCTTGTCTTGCAACTTAAACAAAGTCAAG
CAACCCAGAAGGGATGTGTTCTCCGTCCTCAAGAACATTCAGAGTAGCAA
GCCAGGTGAGACAGATGGATCTGTGGCCTAGATGTCCTATTCGGGAGCCA
AGTTACTGAGCCCTGTGCTCCCTCATTCAGCAGACCTGCACCAGCCAGTA
CACACCAGGTATCAGGATAGGAGCAGTGTAAACCCTCCAGACAATATGGA
GATTGTAAGACCCCATCCCCACGGTATGGAATAATCGCAGTCGTCCCGCT
GTGCAGGCGCAAGGGGTCCCACGTGGCTTCATTCCATATACACTGATTTG
AACAGGCTGTCTGTCCCTCCTGCGGGTTAATTACCTTTTCTCACCCTCCC
TCCTGACTTTCACCTTCCCTTCCCTCTTGCTTTAATTTTTTAAAATTATT
TCCCGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_j23.g1 MSMg01no533_j23.g1 CHROMAT_FILE:
MSMg01no533_j23.g1 PHD_FILE: MSMg01no533_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
         (488 letters)



>mm_chr9_113953756_113954643
          Length = 888

 Score =  928 bits (480), Expect = 0.0
 Identities = 486/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttagctttgtaaaaccatgtctatacatctatgtataactatatagacatacacgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttagctttgtaaaaccatgtctatacatctatgtataactatatagacatacacgtg 260

                                                                       
Query: 61  catatatgatatgaaagtgggaaggggaggggaagggaggagactaacaggggaggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatatgatatgaaagtgggaaggggaggggaagggaggagactaacaggggaggcaga 320

                                                                       
Query: 121 agggagaagagaagaaaaggaggggactggagggaggaggtggtcaaagtacctgacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggagaagagaagaaaaggaggggactggagggaggaggtggtcaaagtacctgacagg 380

                                                                       
Query: 181 tcagagagaacgctgcggcgtgaccccttgtgatgagaatatgccagtgaaaggaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagagaacgctgcggcgtgaccccttgtgatgagaatatgccagtgaaaggaaagcc 440

                                                                       
Query: 241 atcgccttgtcttgcaacttaaacaaagtcaagcaacccagaagggatgtgttctccgtc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcgccttgtcatgcaacttaaacaaagtcaagcaacccagaagggatgtgttctccgtc 500

                                                                       
Query: 301 ctcaagaacattcagagtagcaagccaggtgagacagatggatctgtggcctagatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaagaacattcagagtagcaagccaggtgagacagatggatctgtggcctagatgtcc 560

                                                                       
Query: 361 tattcgggagccaagttactgagccctgtgctccctcattcagcagacctgcaccagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattcgggagccaagttactgagccctgtgctccctcattcagcagacctgcaccagcca 620

                                                                       
Query: 421 gtacacaccaggtatcaggataggagcagtgtaaaccctccagacaatatggagattgta 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gtacacaccaggtatcaggataggagcaatgtaaaccctccagacaatatggagattgta 680

                   
Query: 481 agacccca 488
           ||||||||
Sbjct: 681 agacccca 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)