Query= MSMg01no533_o18.b1 MSMg01no533_o18.b1 CHROMAT_FILE:
MSMg01no533_o18.b1 PHD_FILE: MSMg01no533_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:15 2005
(622 letters)
>mm_chr9_89192373_89193394
Length = 1022
Score = 1091 bits (564), Expect = 0.0
Identities = 604/622 (97%), Gaps = 8/622 (1%)
Strand = Plus / Plus
Query: 1 tgcttaaatttacacccccctgagtcttgaataagtattcctctttccttacctcttccc 60
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 209 tgcttaagtttacacccccctgagccttgaataagtattcctctttccttacctcttccc 268
Query: 61 cagaatttgttgtcacttagtgttttgaagtcagttattttgcttgtgtgagatggaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cagaatttgttgtcacttagtgttttgaagtcagttattttgcttgtgtgagatggaatc 328
Query: 121 tccaagcagttttaattgcattccccccatggctaaggatgtggaatatcttttatttgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cccaagcagttttaattgcattccccccatggctaaggatgtggaatatcttttatttgt 388
Query: 181 tgttaattgtcttttcggttaatgggtccatttgttgattgtgtcataggtagatatcag 240
|||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct: 389 tgttaattgtctgttcagttaatgggtccatttgttgattgtgtcataggt--------g 440
Query: 241 gatctgtgggcagtagatcgtttttgcaggttcttgtgtcctggaacaaggaattggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctgtgggcagtagatcgtttttgcaggttcttgtgtcctggaacaaggaattggaca 500
Query: 301 gaaacacatggacagtccagaaacacaggtgctttattaagagagaaaagtactttgaga 360
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 501 gaaacacatggacagtccagaaacgcagatgctttattaagagagaaaagtactttgaga 560
Query: 361 atggagtgagccagagctggggacagggcagaggctctgtgacacctgttcctagtgaac 420
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 atggagtgagccagagctagggacagggcagaggctctgtggcacctgttcctagtgaac 620
Query: 421 tgagtgactttgtaggcctggggtagtgaacactttctattacacatgccctgcctgtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagtgactttgtaggcctggggtagtgaacactttctattacacatgccctgcctgtta 680
Query: 481 gatcacagcctcatggaaggagttttcatctctctcccatcaggttctgtaagctactgc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 gatcacagcctcatggaaggagttttcatctctctcccatcaggttctgtaagctactac 740
Query: 541 tgatctcattctccacccttttctcctagcacaactggatgctgcaattttattggtgtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatctcattctccacccttttctcctagcacaactggatgctgcaattttattggtgtt 800
Query: 601 tatcatttacatttcttttaga 622
||||||||||||||||||||||
Sbjct: 801 tatcatttacatttcttttaga 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_o18.g1 MSMg01no533_o18.g1 CHROMAT_FILE:
MSMg01no533_o18.g1 PHD_FILE: MSMg01no533_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:15 2005
(670 letters)
>mm_chr9_89331881_89332951
Length = 1071
Score = 1274 bits (659), Expect = 0.0
Identities = 668/671 (99%), Gaps = 1/671 (0%)
Strand = Plus / Minus
Query: 1 cccaggatatcagtgcaagaggcagcagaagagac-acattagaggaactaggaagaagc 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 871 cccaggatatcagtgcaagaggcagcagaagagacaacattagaggaactaggaagaagc 812
Query: 60 agtccgagagacatgggaagatctggcccaacattttcggcagctagaaggttataaaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agtccgagagacatgggaagatctggcccaacattttcggcagctagaaggttataaaca 752
Query: 120 caagtgccccactggatcaaaaatagggaaataagagtggaagaaagttggtaaccaagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caagtgccccactggatcaaaaatagggaaataagagtggaagaaagttggtaaccaagc 692
Query: 180 agaatggtgggagttcctggactctcagaggcagagctgttaccattaccaccttcttct 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 691 agaatggtgggagttcctggactcccagaggcagagctgttaccattaccaccttcttct 632
Query: 240 ttacatcacagcactttcttctctgctcctgacaacttctgtgactcctcttccatctcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttacatcacagcactttcttctctgctcctgacaacttctgtgactcctcttccatctcc 572
Query: 300 tcttcccacatcataaatctacattccctggatgatattttcatattttctcttccctcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcttcccacatcataaatctacattccctggatgatattttcatattttctcttccctcc 512
Query: 360 tgcctcataaggttcttctgtgaccttggcctattggttcatactcatcacaaaacacag 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgccacataaggttcttctgtgaccttggcctattggttcatactcatcacaaaacacag 452
Query: 420 aaaaggcccctatatagatcccaatatacaaaagcctatcagacagacccagagaaaggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaaggcccctatatagatcccaatatacaaaagcctatcagacagacccagagaaaggg 392
Query: 480 aagaaggaagaagaataagttcacacattggaaagccagaaaattctagatgctggtacg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aagaaggaagaagaataagttcacacattggaaagccagaaaattctagatgctggtacg 332
Query: 540 tgctttgaagaaaatagaaataggttagtggaacaggaaattacagatggaattggggta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgctttgaagaaaatagaaataggttagtggaacaggaaattacagatggaattggggta 272
Query: 600 gcagtttatacaatgaaattgcctgaattacctgaatgatgagtcacctaggtagatgtg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcagtttatacaatgaaattgcctgaattacctgaatgatgagtcacctaggtagatgtg 212
Query: 660 taagaaagggt 670
|||||||||||
Sbjct: 211 taagaaagggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
