AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATAAGATCAAAAATTCAGGTG
AGAGTAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTAT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTT
CCTCAGTAAATTGGACATAGTACTATCCTGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCAACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGGAAGAACCCAGATGTC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTAAGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGA
ACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GAATACCCAAGATATAAGATACAATTTGCAAAACACATGAAACTCAAGAA
GAACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAN

CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCTGCATCTTCAGGAGATTTGCTTAATTT
GCCACTAGAGAATGGTGAAGATCTATATGGAACTTCCTATTTTAGTTTAC
TAGACTTTTCTTTTTTCCTGATCATAAATAACTCTCTATTACCCATTCTT
ATGTTGGCAGTTACAATGCTAAACTGAAATATAATTTCTATTTAATAGAA
AATAACTTTCCCTCAATTATCCAGATCTAATCCTGTACTCCATTTCCAAT
TCAAGTGGATTATTTTCTTGAACAGGCCTTGATTTCATTCAAAAAAATAT
TCACTGAGTAGATCAACTATTATGATTCTGCCAAAGGCTTGTTGGTGTAT
TCTAATTATGAGATTGGGTTAAGTAGTTAGGATGTTGTGAACCTACTACA
CTCATTCCTTGGCAATTTCAATTCTGAAGACCTAGAAAGTCCTGAAGCCT
GTTGAAGGCTTGCTCCTTTGCTCTCACAGTATTCTTGACTACCCCCCAGT
TCATTAAATGAGTTGTTCATTTTAATCCTCAGTTTCTTCACATATACATC
ATTGCTGCATTTGGATTGACTTTGCGAAGCATTTTTGAGTGATTCCTGAA
GTAGTTTGTATTTTTAAAATGGAATATTGTTCTCTGGTTTCCAAGTGAAA
GCGAAAAGAGCAAGTCAGTGTTTGTTCTAATAGAATAAATATAAATCTAA
ATTTGCAGGCTGTTCT

Query= MSMg01no534_m13.g1 MSMg01no534_m13.g1 CHROMAT_FILE:
MSMg01no534_m13.g1 PHD_FILE: MSMg01no534_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:24 2005
         (574 letters)



>mm_chr9_28157222_28158192
          Length = 971

 Score = 1087 bits (562), Expect = 0.0
 Identities = 570/574 (99%), Gaps = 3/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctgcatcttcaggagatttgcttaatttgccactagagaatggtgaagatctatatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 cttctgcatcttcaggagatttgcttaatttgccactagagaatggtga---tctatatg 257

                                                                       
Query: 61  gaacttcctattttagtttactagacttttcttttttcctgatcataaataactctctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaacttcctattttagtttactagacttttcttttttcctgatcataaataactctctat 317

                                                                       
Query: 121 tacccattcttatgttggcagttacaatgctaaactgaaatataatttctatttaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacccattcttatgttggcagttacaatgctaaactgaaatataatttctatttaataga 377

                                                                       
Query: 181 aaataactttccctcaattatccagatctaatcctgtactccatttccaattcaagtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaataactttccctcaattatccagatctaatcctgtactccatttccaattcaagtgga 437

                                                                       
Query: 241 ttattttcttgaacaggccttgatttcattcaaaaaaatattcactgagtagatcaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttattttcttgaacaggccttgatttcattcaaaaaaatattcactgagtagatcaacta 497

                                                                       
Query: 301 ttatgattctgccaaaggcttgttggtgtattctaattatgagattgggttaagtagtta 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 ttatgattctgccaaaggcttgttgatgtattctaattatgagattgggttaagtagtta 557

                                                                       
Query: 361 ggatgttgtgaacctactacactcattccttggcaatttcaattctgaagacctagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggatgttgtgaacctactacactcattccttggcaatttcaattctgaagacctagaaag 617

                                                                       
Query: 421 tcctgaagcctgttgaaggcttgctcctttgctctcacagtattcttgactaccccccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcctgaagcctgttgaaggcttgctcctttgctctcacagtattcttgactaccccccag 677

                                                                       
Query: 481 ttcattaaatgagttgttcattttaatcctcagtttcttcacatatacatcattgctgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttcattaaatgagttgttcattttaatcctcagtttcttcacatatacatcattgctgca 737

                                             
Query: 541 tttggattgactttgcgaagcatttttgagtgat 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 738 tttggattgactttgcgaagcatttttgagtgat 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 971
Length adjustment: 10
Effective length of query: 564
Effective length of database: 961
Effective search space:   542004
Effective search space used:   542004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)