Query= MSMg01no535_i11.b1 MSMg01no535_i11.b1 CHROMAT_FILE:
MSMg01no535_i11.b1 PHD_FILE: MSMg01no535_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:22 2005
(538 letters)
>mm_chr9_45370887_45371825
Length = 939
Score = 919 bits (475), Expect = 0.0
Identities = 502/513 (97%), Gaps = 5/513 (0%)
Strand = Plus / Minus
Query: 5 gaattcctctcttt---tcacgcttacatcaggtgctgagggttggcagtgttgtttaat 61
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 511 gaattcctctc--taaatcacgcttacatcaggtgctgaggtttggcagtgttgtttaat 454
Query: 62 cttaatgtggaagtggtggggagagaggcatgttctgcagaggtgaggttgggaggcaaa 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 453 cttaatgtggaagtggtggggagagaggcacgttctgcagaggtgaggttgggaggcaaa 394
Query: 122 cttgggtataggaagaacttggtcatagcacagccccggggtcttttagtcatagatgct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttgggtataggaagaacttggtcatagcacagccccggggtcttttagtcatagatgct 334
Query: 182 gaagttggcttagcctcgactcatcccatcgagacagagtctgaatctatgctacagacg 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 333 gaagttggcttagcctcgactcgtcccatcgagacagagtctgaatctatgctacagtcg 274
Query: 242 ctgagctgagagtgtgcagagtgactgttgggaagggcggaacctcaactttcacgctgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgagctgagagtgtgcagagtgactgttgggaagggcggaacctcaactttcacgctgg 214
Query: 302 gaataatatgtgctaaacagggcacagggtctgtagtaaggtggaatcagattaaatccg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaataatatgtgctaaacagggcacagggtctgtagtaaggtggaatcagattaaatccg 154
Query: 362 gtccctccatgtaaccatgacgttacctttgacaacaaacttagttctgaaccctaatac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtccctccatgtaaccatgacgttacctttgacaacaaacttagttctgaaccctaatac 94
Query: 422 tatcaactgtaaaaacggggctaaaatacttccaccattgagagagtctgaggctggatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 93 tatcaactgtaaaaacggggctaaaatacttccaccattgagagagtctgaggctgggcg 34
Query: 482 tggtgctaagagtagcttacctaatattcatat 514
|||||||||||||||||||||||||||||||||
Sbjct: 33 tggtgctaagagtagcttacctaatattcatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_i11.g1 MSMg01no535_i11.g1 CHROMAT_FILE:
MSMg01no535_i11.g1 PHD_FILE: MSMg01no535_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:22 2005
(560 letters)
>mm_chr9_45168748_45169706
Length = 959
Score = 791 bits (409), Expect = 0.0
Identities = 548/667 (82%), Gaps = 111/667 (16%)
Strand = Plus / Plus
Query: 1 ctgagagctggtaggccagctagcctggtacaatggagaacaaaacactccctgaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctgagagctggtaggccagctagcctggtacaatggagaacaaaacactccctgaaacaa 160
Query: 61 acaaggtgaaaaaagactgctgtcatctgacctccacaagtgtgccctgacacacaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 acaaggtgaaaaaagactgctgtcatctgacctccacaagtgtgccctgacacacaggtg 220
Query: 121 cctgcggagagagatgacagggggagggagagaaagaagaatcatttgctaaggaaataa 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 221 cctgcggagagagatgacagggggagagagagaaagaagaatcatttgctaaggaaataa 280
Query: 181 acttaccatccttgcttatttttgcctatcctgactaaagggagagtttttactgctgcc 240
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 281 atttaccatccttgcttatttttgcctatcctgaccaaagggagagtttttactgctgcc 340
Query: 241 cagcctgacatttcctgctataggcaaaaagtccttctctctaattcagtcttgagcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cagcctgacatttcctgctataggcaaaaagtccttctctctaattcagtcttgagcaga 400
Query: 301 gagcagctggggccagttcaatagcttgctccatgactaacggttcttcagagagtgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagcagctggggccagttcaatagcttgctccatgactaacggttcttcagagagtgaga 460
Query: 361 cactagaacccaccatacctggagtccccctctg-------------------------- 394
||||||||||||||||||||||||||||||||||
Sbjct: 461 cactagaacccaccatacctggagtccccctctgaggataaagggggctggattttgaaa 520
Query: 394 ------------------------------------------------------------ 394
Sbjct: 521 ggagatgggggcagggagaagcctcctgacaccatgctcaggaggttctgttcccagggc 580
Query: 395 --------------gccctgggtatcatactcattggtctgcatcaaggtcctcctgtct 440
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggccatcatcttggccctgggtgtcatactcattggtctgcatcaaggtcctcctgtct 640
Query: 441 gggctgatgcaggattttcttgactgctgcacagtaactagcctgtaggtccactgacct 500
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gggctgatgcgggattttcttgactgctgcacagtaactagcctgtaggtccactgacct 700
Query: 501 ggcttctactctgcacctgcgtgtgcttgtcccc-----------catcctttttccaaa 549
||||||||||||||||||| | |||||||||||| ||||||| |||||||
Sbjct: 701 ggcttctactctgcacctgagcgtgcttgtccccatcccaacccccatccttcttccaaa 760
Query: 550 gtcatct 556
|||||||
Sbjct: 761 gtcatct 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
