BAC Information

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BAC

Clone NameMSMg01-535L15
Chromosome9 (Build37)
Map Location 109,719,778 - 109,720,386
singlet/doubletsinglet
Overlap geneSpink8
Upstream geneNckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik
Downstream gene3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535L15.T7 (MSMg01no535_l15.b1)MSMg01-535L15.TJ (MSMg01no535_l15.g1)
ACCAG603108AG603109
length774750
length of high quality
(start - end)		604 (47 - 650)462 (79 - 540)
definitionCHROMAT_FILE: MSMg01no535_l15.b1 PHD_FILE: MSMg01no535_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:37 2005CHROMAT_FILE: MSMg01no535_l15.g1 PHD_FILE: MSMg01no535_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTGTATATCAGGCTGGTCTCAAGCTCAAATTCACAGAGATC
CACCTGCCCCTGCCTCTGAAATGTTGGGATTAAAGGTGTGGACAACCATG
TCTGACATCTACACACTCTTAATGTACTTTCTTCTTGAGTCATTTATGAA
AATATCTATTGATATTTGGCATGGGTCATGCTATCACTGTATCTCCCACC
ATTGGTGTGTCCTACTGTGAGTCTGGGGACATTACTGCCATATAAGTTAT
CTAGCTTAGTTTGCAGCACACAGTAAATATTTCTTGGATATGTAATAAGC
TAATTATGTGCCCTGGGAAACCCATTATGGTATTAAAGATCTTGGGAGCA
ATATAGATAATGTCTTACAGTAATTTAAGCTGTTACTAAGCAAACAGAAT
TGAGAAAAATATTCCTATTGATGACTAATGTTCTGTTTCAGACAAGGCAT
CTAACAAATGGGCCACACAGGTAGCTGCCACTGATGTGGCAAATACTGAG
AAGAAAGTCTAAATGGGAAAGAAATGTGTGGGGCAGGGCCCCACAGCCTC
TACAGTTAACTGTGGATGCTGCATTTGCTAAACACTGTCATTCATTAGCC
AGAAGAACAGAGTCTCCTACAGAGCCTACTGAAGTTCTTTTTGTGCTTGA
GACATGTACAGATATGAAGTGTGGGAATGAGTGATTCCTAGGTGAGTGCC
CTCCTTGATAACTAGTATTTTGGN

NAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTCAT
CATGAATGGGTGTTGGACTTTGTTAAATGCTTTCTCACATCTAATAAGAT
GATCATGTGATTTTTGTCGTTGAGTTTGTTTATATAGTGGATTATGTTGA
TGGATTTTCATATATTAAAACATCCCGGCATCACTGTGATGAAGCCTACT
TAATCATGATGGATGGTCGTTTTGATTTGTTCTTGGATTCAGTTTGCGAG
AATTTTATTGAATATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGA
AGTTCTATTTCTTTGTTGGATCTTTGTATGGTTTAGGTATCAGAGTAATT
GTGGCTTCATAGAATGAAATGGGTAGAGTACCTTCTGTTTCTATTTTGTG
GAATAGTTTGAGGAGAATTGGAATTAGGTCTTCTTTGACTGTCTGATGGA
ATTCTGTACTAAAATCCTTTGGTCCGGGGCTTTTTTTGGTCGAGAGACTA
TTAATGACTGTTTCCATGTCTTTAGGAGATATACNACTATTTAGATCATT
ANTCTGACCCTGATTTACCTGGTATCTGTCTAGAAAATTGTCTATTTCAT
CCAGTTTTCCAGNTTTGGTGAGTATAGCCCTTTTGTAGGANGATCTGATG
ATAAATTTGACTTCCTCAAATCCGTTGTTATGCCCCCCTTTTCATTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_l15.b1 MSMg01no535_l15.b1 CHROMAT_FILE:
MSMg01no535_l15.b1 PHD_FILE: MSMg01no535_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:37 2005
         (604 letters)



>mm_chr9_109719681_109720684
          Length = 1004

 Score = 1052 bits (544), Expect = 0.0
 Identities = 590/610 (96%), Gaps = 10/610 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtatatcaggctggtctcaagctcaaattcacagagatccacctgccc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaattcactctgtagatcaggctggtctcaagctcaaattcacagagatccacctgccc 647

                                                                       
Query: 64  ctgcctctgaaatgttgggattaaaggtgtggacaaccatgtctgacatctacacactct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctgcctctgaaatgttgggattaaaggtgtggacaaccatgtctgacatctacacactct 587

                                                                       
Query: 124 taatgtactttcttcttgagtcatttatgaaaatatctattgatatttggcatgggtcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taatgtactttcttcttgagtcatttatgaaaatatctattgatatttggcatgggtcat 527

                                                                       
Query: 184 gctatcactgtatctcccaccattggtgtgtcctactgtgagtctggggacattactgcc 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gctatcactgtatctcctaccattggtgtgtcctactgtgagtctggggacattactgcc 467

                                                                       
Query: 244 atataagttatctagcttagtttgcagcacacagtaaatatttcttggatatgtaataag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atataagttatctagcttagtttgcagcacacagtaaatatttcttggatatgtaataag 407

                                                                       
Query: 304 ctaattatgtgccctgggaaacccattatggtattaaagatcttgggagcaatatagata 363
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 406 ctaattctgtgccctgggaaacccattatggtattaaaaatcttgggagcaatatagatg 347

                                                                       
Query: 364 atgtcttacagtaatttaagctgttactaagcaaa--------cagaattgagaaaaat- 414
           | |||||||||||||||||||||||||||||||||        |||||||||||||||| 
Sbjct: 346 acgtcttacagtaatttaagctgttactaagcaaacgttctctcagaattgagaaaaata 287

                                                                       
Query: 415 attcctattgatgactaatgttctgtttcagacaaggcatctaacaaatgggccacacag 474
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 286 attcctattgatgactaatgttctgtttcagacaaggcatctggcaaatgggccacacag 227

                                                                       
Query: 475 gtagctgccactgatgtggcaaatactgagaagaaagtctaaatgggaaagaaatgtgtg 534
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 226 gtagctgccactgatgtggcaaatgctgagaagaaagtctaaatgggaaag-aatgtgtg 168

                                                                       
Query: 535 gggcagggccccacagcctctacagttaactgtggatgctgcatttgctaaacactgtca 594
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gggcagggcccgacagcctctacagttaactgtggatgctgcatttgctaaacactgtca 108

                     
Query: 595 ttcattagcc 604
           ||||||||||
Sbjct: 107 ttcattagcc 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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