BAC Information

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BAC

Clone NameMSMg01-536E24
Chromosome9 (Build37)
Map Location 98,818,492 - 98,818,908
singlet/doubletsinglet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik
Downstream geneLOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E24.T7 (MSMg01no536_e24.b1)MSMg01-536E24.TJ (MSMg01no536_e24.g1)
ACCAG603556AG603557
length797797
length of high quality
(start - end)		608 (47 - 654)443 (79 - 521)
definitionCHROMAT_FILE: MSMg01no536_e24.b1 PHD_FILE: MSMg01no536_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:22 2005CHROMAT_FILE: MSMg01no536_e24.g1 PHD_FILE: MSMg01no536_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCTATAAAAAGTATCTTTGAATTTATCTTTGTATATGCTACAAG
AGCCTGATTTTGTTGTTTTGCAATTAGGTAGCCAGTTTTCCCAACACCAT
TGGTTGAACCTATTTTGTGTGTTCTTGACCACATCATCTAAGATGTTGCC
TGAATATATTTGCACATATAACTCTGTTATTTGCACATATAATTCTCCAT
TCTACCCCACTGGTCTTTATGTTTTTCTGTATGCCAGTGCAATTCTGCTT
TTGTTAAAAAAATATTAGTAATGTGCTTTTTAAATGTCACAAGAAAAAAA
AAGATTACATGTGAAGTTCTTGCTGATAGCATCATAATCCATAGTGAAAA
GAACTCTAAGAGTTTCCTCTAAAATAGAAACAAGGCTCTGATACCCACCC
TACCATTTCTAACATCGTAAGTCCAGGTTAAAACAAATAGGCAAGAAGAA
CAAAGTGTCCAAACAAGAAGTGAAACTAATCCTATTCGCAGATGGCATGC
AGGATACCCAATAAAATGGTTAACAACTAATAAATAAGCCCAGCAAAGTC
GCAAGATCAGTTGTGTCACTATACACTAAAAACAGAATGTATGGGAAGTA
AATTAGGAAAATGTCTCCTTTATAGTAGCATCAAACATTAATGAAAGAAG
TGTGAGGTAGGATGTAACACAAGAAAGGAGCCATGACTTCTAGCTTTCTT
ATGGCTTGGAGTCAAGCATCCATGAAAACATGTGTCTGTTCGTGAGG

TTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCACTCCCATCTAGAA
ACCTCTGTGTAAGTGTGTGTGTGTGATCCTGTGTTTCTGGAGGCACGTAG
GGTGGTGTGGCGGGGAATTTTGGCCATTCTGGTGGTTTAGAGAAAGAATC
AGTCCTTGGAGCTCCCTTTGGTTAGTATTGCCTTTATTTGTTGTATCATC
ATTTTCCCACCCGAGTCAGGTTTTTTCACCTCTTTGTCCCATCCCCACCA
AGAAATTCTCTTTATTTATAAAATAAAATGGAAATGGAAACTATCAAAAC
GAATCTTCTTTTGTTCCTTGGAGGTAAATCTTTGTATTTAAAGCCAGTAA
CAAATTTTATTTATTTATTTATTTACTTATTTGGTTGGGGGTGGGTTGGG
ACAGGGTTTCTCTGGGTATCCCTGACTCTCCTGGAACTCACTCTGTAGAC
CAGGCTGGACTCAAACTTAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCT
GGGATTAAAGGCGTGTGCCATCAGTGCCCGGCAACTAAGTTATTTTTATG
TGACTATTTTCCCCTTATAAAATCGACCTTTATATTTGTATTATCTTTAA
GGAGATAATTGGTGTGGGGAAAACATGGGTGATTGTGTTTTTTCCTACAA
ATGTCGGAAGCCAATGTGTTTTTTTCCCCACAAACATCCAACATTAATTT
TCGTTAAAGCTTAATATATCCCCCACCCCCCAATTTTTGGAACTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e24.g1 MSMg01no536_e24.g1 CHROMAT_FILE:
MSMg01no536_e24.g1 PHD_FILE: MSMg01no536_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:23 2005
         (443 letters)



>mm_chr9_98818374_98819219
          Length = 846

 Score =  596 bits (308), Expect = e-174
 Identities = 390/420 (92%), Gaps = 11/420 (2%)
 Strand = Plus / Minus

                                                                       
Query: 28  tgtgtaagtgtgtgtgtgt--gatcctgtgtttctggaggcacgtagggtggtgtggcgg 85
           |||||  ||||||||||||  |||| ||||||||||||||||||||||||||||||||||
Sbjct: 535 tgtgt--gtgtgtgtgtgtaagatcgtgtgtttctggaggcacgtagggtggtgtggcgg 478

                                                                       
Query: 86  ggaattttggccattctggtggtttagagaaagaatcagtccttggagctccctttggtt 145
           |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 477 ggaattttggccgttctggtggtttagagaaagaatcagtccttggaggttcctttggtt 418

                                                                       
Query: 146 agtattgcctttatttgttgtatcatcattttcccacccgagtcaggttttt-tcacctc 204
            ||||||||||||||||| ||||| | |||||||||||| |||||||||||| |||||||
Sbjct: 417 tgtattgcctttatttgtggtatcgttattttcccacccaagtcaggtttttgtcacctc 358

                                                                       
Query: 205 tttgtcccatccc-caccaagaaattctctttatttataaaataaaatggaaatggaaac 263
           ||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||| 
Sbjct: 357 tttgtccca-cccacaccaagaaattctctttatttataaaataagatgaaaatggaaat 299

                                                                       
Query: 264 tatcaaaacgaatcttcttttgttccttggaggtaaatctttgtatttaaagccagtaac 323
           |||||||| |||||||||||||| ||||||||| ||| ||| ||||||||||||||||||
Sbjct: 298 tatcaaaatgaatcttcttttgtaccttggaggaaaagcttagtatttaaagccagtaac 239

                                                                       
Query: 324 aaattttatttatttattta-tt---tacttatttggttgggggtgggttgggacagggt 379
           |||||||||||||||||||| ||   |||||||||||| |||||||||||||||||||||
Sbjct: 238 aaattttatttatttatttacttacttacttatttggtagggggtgggttgggacagggt 179

                                                                       
Query: 380 ttctctgggtatccctgactctcctggaactcactctgtagaccaggctggactcaaact 439
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttctctgtgtatccctgactctcctggaactcactctgtagaccaggctggactcaaact 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 846
Length adjustment: 10
Effective length of query: 433
Effective length of database: 836
Effective search space:   361988
Effective search space used:   361988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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