Query= MSMg01no536_l08.b1 MSMg01no536_l08.b1 CHROMAT_FILE:
MSMg01no536_l08.b1 PHD_FILE: MSMg01no536_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:54 2005
(622 letters)
>mm_chr9_82604936_82605955
Length = 1020
Score = 1096 bits (567), Expect = 0.0
Identities = 606/619 (97%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttttctatgattatggaaaatctgagtgaagggtcatgccatagatgcacatg 63
||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||| |
Sbjct: 204 ggaattcttttctatgactgtggaaaatctgagtgaaggatcatgccat-gatgcacaag 262
Query: 64 ttcataagtgtgcaggaagcaatgctttggtaactttgctctcgggcttttgaaagcaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcataagtgtgcaggaagcaatgctttggtaactttgctctcgggcttttgaaagcaga 322
Query: 124 cactcttgctctcacactgccagcaggagctccggatttctcatcttaacttaaggccaa 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcttgttctcacactgccagcaggagctccggatttctcatcttaacttaaggccaa 382
Query: 184 gcagctctcccattatcccgttagcccattatccccctggaccactaggctggggcagct 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 gcagctctcccattatcccgttagcccattatcccgctggaccactaggctggggcagct 442
Query: 244 ctccctttatcctgctgggctagatgggattgccttcgttcttttcccagaatttctgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccctttatcctgctgggctagatgggattgccttcgttcttttcccagaatttctgct 502
Query: 304 gtgaaaatttgagttgaaatcaaaattgtttcaccacttggagtgaaacaaccttagaat 363
||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 503 gtgaaaatttgagttgaaatcaaaagtgtttcgccacttggagtgaa-caaccttagaat 561
Query: 364 aactctagaaacaaatattcattcatatgtctaaaaatatatatttgctttcaaaatcat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aactctataaacaaatattcattcatatgtctaaaaatatatatttgctttcaaaatcat 621
Query: 424 tttactatggaaaaaaatcatttcagtgcaagctatgttaattgtagtttagtttatgaa 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 tttactatggaaaaaaatcatttcagtgcaagctatgttaattgtattttagtttatgaa 681
Query: 484 agctgatctttgccaccaaagactgacctcaaagacatcattgagctctactatagaaat 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agctggtctttgccaccaaagactgacctcaaagacatcattgagctctactatagaaat 741
Query: 544 ttatttcccccctccccccaaaaaaattagtgagactttctcaaaatgcaacctgctctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttatttcccccctccccccaaaaaaattagtgagactttctcaaaatgcaacctgctctc 801
Query: 604 tgaatgaattaatataggt 622
|||||||||||||||||||
Sbjct: 802 tgaatgaattaatataggt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l08.g1 MSMg01no536_l08.g1 CHROMAT_FILE:
MSMg01no536_l08.g1 PHD_FILE: MSMg01no536_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:54 2005
(569 letters)
>mm_chr9_82728294_82729262
Length = 969
Score = 683 bits (353), Expect = 0.0
Identities = 386/397 (97%)
Strand = Plus / Minus
Query: 4 tgtcatagttatgttcctactcctaagcagcaactgtgtgattgtggtgaatcctgagag 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 397 tgtcatagttatgttcctactcctaagcagcaactgtgtgattgcggtgaatcctgagag 338
Query: 64 atctcaaccattttggattaccacatttgcttgccacagacatgcagatatcaaaataaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 337 atctcaaccattttggattaccacatttgcttgccacagacatgcagatataaaaataaa 278
Query: 124 agctaatttgtctgtagcatttttctcttgccacaaacagaagtgaggttgtccattcag 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 277 agctaatttgtctgtagcatttctctcttgccacaaacagaagtgaggttgtccattcag 218
Query: 184 gctttacttatagatttatttatgtatgaaagtgttttgctcacacggatgtctgtgcac 243
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 217 gctttacttatagatttatttatgtatgtaagtgttttgctcacatggatgtctgtgcac 158
Query: 244 catgtgtgtgcttggtgccctgcctgtagagtttagaggaggctaacagatcccctggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 catgtgtgtgcttggtgccctgcctgtagagtttagaggaggctaacagatcccctggaa 98
Query: 304 ctgcagttacagagggctgtgcgctgacatgtgcgtattagggattgaacagaggtcctt 363
||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 97 ctgcagttacagagggctgtgtgctgacatgtgtgtactagggattgaacaaaggtcctt 38
Query: 364 ggtaagaacaataggtgcttgtaagcagggagccacg 400
|||||||| || |||||||||||||||||||||||||
Sbjct: 37 ggtaagaataacaggtgcttgtaagcagggagccacg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
