BAC Information

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BAC

Clone NameMSMg01-536P14
Chromosome9 (Build37)
Map Location 3,982,973 - 3,983,341
singlet/doubletsinglet
Overlap genenone
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236
Downstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536P14.T7 (MSMg01no536_p14.b1)MSMg01-536P14.TJ (MSMg01no536_p14.g1)
ACCAG604056AG604057
length764775
length of high quality
(start - end)
378 (47 - 424)564 (59 - 622)
definitionCHROMAT_FILE: MSMg01no536_p14.b1 PHD_FILE: MSMg01no536_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:14 2005CHROMAT_FILE: MSMg01no536_p14.g1 PHD_FILE: MSMg01no536_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCATATTGCCTGTCTGTCTGTTCCCCCTTCCCTTTCTGGCAT
GATGGGTAGGCTCTTTTTGACCACCTCTTGTGAACTCTAAATCCCTTAGG
TGTTTGTGAGTGTGATCTGACCAGAGATATCTGGAAGCATAAAGGTGGCT
ATCAAATGAGTTACCATATATGTGTCCTTGTATCTACACATAAATGAGTG
ACTACAATGTTAGTAGCTGTCAAATTACTCATTTAATCCCATTTCATTTA
AATGTTTACAGTACATTTTTCAAGAATTTTACACAATGTGTGTATGTGTG
TGTGTGTGTGTTTGTGCAAGTATGCATGTGTGTGTGTGTGTGTGTGCGTG
TGTATGGTGGGTGGAATTGACATAATATTCTGCTATTTCTACCTTTGCTT
GATTTTCCTTATCCGTATCATATCATGAACGCACATGATCGTGGATCTCT
ATGAGTTCTTGGTCACACTATTCCACTTCATAAGTTCCCAGCTCGCCTAG
GCCACACTGATGACACTCTCTCTCCATTTCTCTGTCCCTGCCTGTCTTTC
TCTCCGTTCTTTTCTCTGTTTCCCCCTGTTCCCGTCCGTTTTCTGACTTC
TTTCTTTCCTGACCAGACCCTGCCCTCCATTTTTACTTTCTTTCCCACTT
TTTTCCCTTTTGTCCCTTATTTTCTCGCTTTTTCCCCCCTTTTATCCCTA
TTTTTACTTCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCACATAAAACCAGAGACACTAAAACTTATAGAGGAGAAAGAG
GAGCAAAACTTCTAAGATATGGGCACGGGGGAAAATTCCTGAACAGAACA
CCAATGGCTTGTGGTGTAAGACTGAGAATCAACAAATGGGACCTCATAAA
ATTCCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAATACAAAGAGGA
CCCCAACAGTTTGGGTAAATATTTTTTACCAATCCTAAAACTGATAGGGA
CTAGTATCTAATATATACAAAGAACTCAAGACGCTGGACTCAAGAAAATC
AAATATCCCTATTAAAAATGGGCTACAGAGCTAAACAAAGAATTCTCAAC
TGAGGAATGCCAAATCGCCGAGGAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCCACTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGTAGATGTTGGTGA
GCATGTGGAGAAAGAGGGACACTCCTCCATTGCTGGTGAGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCACAGAAAATTGGACA
TAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA
GATGTTTCCACTGATAATNAGAACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATAGGCAGAAGCTCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_p14.b1 MSMg01no536_p14.b1 CHROMAT_FILE:
MSMg01no536_p14.b1 PHD_FILE: MSMg01no536_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:14 2005
         (378 letters)



>mm_chr9_3982769_3983545
          Length = 777

 Score =  677 bits (350), Expect = 0.0
 Identities = 367/374 (98%), Gaps = 5/374 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcatattgcctgtctgtctgttcccccttccctttctggcatgatgggtagg 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctttcatattgcctgtctgtctgttcccc-ttccctttctggcatgatgggtagg 263

                                                                       
Query: 65  ctctttttgaccacctcttgtgaactctaaatcccttaggtgtttgtgagtgtgatctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctttttgaccacctcttgtgaactctaaatcccttaggtgtttgtgagtgtgatctga 323

                                                                       
Query: 125 ccagagatatctggaagcataaaggtggctatcaaatgagttaccatatatgtgtccttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagagatatctggaagcataaaggtggctatcaaatgagttaccatatatgtgtccttg 383

                                                                       
Query: 185 tatctacacataaatgagtgactacaatgttagtagctgtcaaattactcatttaatccc 244
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatccacacatgaatgagtgactacaatgttagtagctgtcaaattactcatttaatccc 443

                                                                       
Query: 245 atttcatttaaatgtttacagtacatttttcaagaattttacacaatgtgtgtatgtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttcatttaaatgtttacagtacatttttcaagaattttacacaatgtgtgtatgtgtg 503

                                                                       
Query: 305 tgtgtgtgtgtttgtgcaagtatgcatgtgtgtgtgtgtgtgtgtgcgtgtgtatggtgg 364
           |||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 504 tgtgtgtgt--ttgtgcaagtatgcatgtgtgtgtgtgtgtgtg--cgtgtgtatggtgg 559

                         
Query: 365 gtggaattgacata 378
           ||||||||||||||
Sbjct: 560 gtggaattgacata 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 777
Length adjustment: 9
Effective length of query: 369
Effective length of database: 768
Effective search space:   283392
Effective search space used:   283392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)