Query= MSMg01no538_a16.b1 MSMg01no538_a16.b1 CHROMAT_FILE:
MSMg01no538_a16.b1 PHD_FILE: MSMg01no538_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:36 2005
(639 letters)
>mm_chr9_53324512_53325550
Length = 1039
Score = 1183 bits (612), Expect = 0.0
Identities = 631/640 (98%), Gaps = 5/640 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttcaatctttaacaacataaaagaaaacaaagatgcaaatactatacctttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcttttcaatctttaacaacataaaagaaaacaaagatgcaaatactatacctttc 259
Query: 65 tatatcctaactacagtatcatcttcactcttttcaatattgttttttaagtaaattaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatatcctaactacagtatcatcttcactcttttcaatattgttttttaagtaaattaac 319
Query: 125 tgctgatactgactaggccctgctgccaattacagaaggaagaatcacacgatctggcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgctgatactgactaggccctgctgccaattacagaaggaagaatcacacgatctggcta 379
Query: 185 gctatgtctttacataaaatctcaaaaacaacccattttctgatcttttggcaccaaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctatgtctttacataaaatctcaaaaacaacccattttctgatcttttggcaccaaaaa 439
Query: 245 tacttcatattagaaaaatataactgaaacacttgtctttgacaccaatttagcattcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacttcatattagaaaaatataactgaaacacttgtctttgacaccaatttagcattcaa 499
Query: 305 cacaatgttctgtgaatattccagaacaatagttctcaacctatgggtcacaagcccttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacaatgttctgtgaatattccagaacaatagttctcaacctatgggtcacaagcccttt 559
Query: 365 gggagtcgacaaccctttcacgggggttgcctatttcagatatttacattgtgattaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggagtcgacaaccctttcacgggggttgcctatttcagatatttacattgtgattaata 619
Query: 425 acaatcataacattacagtt-----ataaagtagcaacaaaaataattttctgttgggac 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 acaatcataacattacagttcagttataaagtagcaacaaaaataattttctgttgggag 679
Query: 480 tcagtgcaacatgagaactgtattaaagatttgcagcattgggaatattaagaaccactg 539
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 680 tcactgcaacatgagaactgtattaaagatttgcagcattggaaacattaagaaccactg 739
Query: 540 ctcaaggagtgctaatcaaaaccaaggagcctatgttattcactgctaagtgtggcacag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctcaaggagtgctaatcaaaaccaaggagcctatgttattcactgctaagtgtggcacag 799
Query: 600 aaaagccattcagtaattctttttgtttgtgggtttttgt 639
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaagccattcagtaattctttttgtttgtgggtttttgt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_a16.g1 MSMg01no538_a16.g1 CHROMAT_FILE:
MSMg01no538_a16.g1 PHD_FILE: MSMg01no538_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:36 2005
(583 letters)
>mm_chr9_53381633_53382615
Length = 983
Score = 1120 bits (579), Expect = 0.0
Identities = 582/583 (99%)
Strand = Plus / Minus
Query: 1 tcattatgcagcacatagatatgagttacaggagaaaatctgtaatttcctgcattatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tcattatgcagcacatagatatgagttacaggagaaaatctgtaatttcctgcattatat 724
Query: 61 gaattcctgaaaaacacagagaattaactaagctacaaagaaatttaaccaatttctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattcctgaaaaacacagagaattaactaagctacaaagaaatttaaccaatttctaaa 664
Query: 121 tataaatccaaactggtaaagttaatgaaaatatatttattcaaacctaactgtaggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tataaatccaaactggtaaagttaatgaaaatatatttattcaaacctaactgtaggaca 604
Query: 181 gacccaaactgagttatgcaaacagtaactgtatgcttagttagctccttaggagtagaa 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gacccagactgagttatgcaaacagtaactgtatgcttagttagctccttaggagtagaa 544
Query: 241 cagctcagtcatagaacatttctcaaaatataaatttgtacagtaaaatctagcaattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cagctcagtcatagaacatttctcaaaatataaatttgtacagtaaaatctagcaattaa 484
Query: 301 aaagacataatttacatcttgaagacgtttttgttgttgttacagtaggatggatttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaagacataatttacatcttgaagacgtttttgttgttgttacagtaggatggatttatt 424
Query: 361 tcttaaaggcccagtacaaaaaatggttgaagaaagtgactttttaataaaatatacacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcttaaaggcccagtacaaaaaatggttgaagaaagtgactttttaataaaatatacacc 364
Query: 421 cgtagaaaaaaaaatcctaatatgctgatatttaaacagtaagaacttaagaaaacactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cgtagaaaaaaaaatcctaatatgctgatatttaaacagtaagaacttaagaaaacactt 304
Query: 481 caatatctaggcacaatcggtcaagtattaatgataatttctgtcattcctttaaagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caatatctaggcacaatcggtcaagtattaatgataatttctgtcattcctttaaagttt 244
Query: 541 aggccagcttttcaacttgactgttgtttatgagtcagtccaa 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggccagcttttcaacttgactgttgtttatgagtcagtccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
