Query= MSMg01no538_d09.b1 MSMg01no538_d09.b1 CHROMAT_FILE:
MSMg01no538_d09.b1 PHD_FILE: MSMg01no538_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:48 2005
(568 letters)
>mm_chr9_119891709_119892677
Length = 969
Score = 1087 bits (562), Expect = 0.0
Identities = 565/566 (99%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgttgtcaggaaggtgggctacatctgggagtgactgtatcggcaacccga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgttgtcaggaaggtgggctacatctgggagtgactgtatcggcaacccga 263
Query: 64 gtgactaagtgtgtggccgttgctgtggtgtaggcttttctacagtacatgaaggcgaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgactaagtgtgtggccgttgctgtggtgtaggcttttctacagtacatgaaggcgaaa 323
Query: 124 ggacctccgggaaggggaaactgaggaaggagaggaaatgcatgcagaagagggagtaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacctccgggaaggggaaactgaggaaggagaggaaatgcatgcagaagagggagtaga 383
Query: 184 ggtgcgtgggagagagcctacgtgtgcccgcgggtggtcggtgtagctgcgccccggtga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgcgtgggagagagcctacgtgtgcccgcgggtggtcggtgtagctgcgccccggtga 443
Query: 244 ctcacggcagtggcctctgagtgtgacggtgacaggtgaacatacgacacaatccttctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcacggcagtggcctctgagtgtgacggtgacaggtgaacatacgacacaatccttctc 503
Query: 304 cccccc-cctccctcccggggtccgtgactcaccaagcctcgctcattcctcactcatcc 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccccccgcctccctcccggggtccgtgactcaccaagcctcgctcattcctcactcatcc 563
Query: 363 ctccaaaccctccctgacccccgcctgccgagggcgcccggcacacgccgcagctcgggc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctccaaaccctccctgacccccgcctgccgagggcgcccggcacacgccgcagctcgggc 623
Query: 423 accctccccctagggagcccgaggaggaagacgaccaatgtcacctgccccggccacgcg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accctccccctagggagcccgaggaggaagacgaccaatgtcacctgccccggccacgcg 683
Query: 483 agtaacttctgaaaagttctcaggcaactaggtcaaaaggaaactcacccgcgggcacgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtaacttctgaaaagttctcaggcaactaggtcaaaaggaaactcacccgcgggcacgc 743
Query: 543 gcgccccgtcccactgccacctgcgc 568
||||||||||||||||||||||||||
Sbjct: 744 gcgccccgtcccactgccacctgcgc 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_d09.g1 MSMg01no538_d09.g1 CHROMAT_FILE:
MSMg01no538_d09.g1 PHD_FILE: MSMg01no538_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:48 2005
(560 letters)
>mm_chr9_120007936_120008895
Length = 960
Score = 1060 bits (548), Expect = 0.0
Identities = 557/560 (99%)
Strand = Plus / Minus
Query: 1 tataaagtcattaaatcatctaaacagcactaattcagaaaagttcatcttcatgttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 tataaagtcattaaatcatctaaacagcactaattcagaaaagttcatcttcatgttgat 882
Query: 61 ctgcagaaagtttgctcaatagagtgggctgatgccctagaatcattagactgtgtaatg 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 881 ctgcagaaagtttgctcaatagagtgggctgatgccctggaatcattagactgtgtaatg 822
Query: 121 gtgacaggaaaggcagatcagcagtgagatgcaatcctgagacaaagtctctgggatcca 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 821 gtgacaggaaaggcagatcagcagtgagatgcaatcctgagacgaagtctctgggatcca 762
Query: 181 tacctctcaaagcacacccatggcagccatgcaaaatggtgggcaatctccaggaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tacctctcaaagcacacccatggcagccatgcaaaatggtgggcaatctccaggaaactg 702
Query: 241 atttgctggccataacatttccaacatggctcgtgctaacattggatattcctatcccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atttgctggccataacatttccaacatggctcgtgctaacattggatattcctatcccct 642
Query: 301 tccccaaagccgtacagccctcgattcaccccaaataaagttgttctgtttccccaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tccccaaagccgtacagccctcgattcaccccaaataaagttgttctgtttccccaaagc 582
Query: 361 tgatcctggagtgtcgtcatttccgttcatactcacgagccatctgaaaccctgttcgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgatcctggagtgtcgtcatttccgttcatactcacgagccatctgaaaccctgttcgtt 522
Query: 421 ggctctgctctctcttcatcctcatgggctggtggccaatgaccctgggaagaagggaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggctctgctctctcttcatcctcatgggctggtggccaatgaccctgggaagaagggaga 462
Query: 481 cccgcaaataccccggatctggagttacaagtgactgtgagctgacaggtaaatgctggg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 461 cccgcaaataccccggatctggagttacaagtgactgtgagctgacaggtaagtgctggg 402
Query: 541 aattgaacccgggtcttcca 560
||||||||||||||||||||
Sbjct: 401 aattgaacccgggtcttcca 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
