Query= MSMg01no538_f10.b1 MSMg01no538_f10.b1 CHROMAT_FILE:
MSMg01no538_f10.b1 PHD_FILE: MSMg01no538_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:58 2005
(676 letters)
>mm_chr9_83169211_83170285
Length = 1075
Score = 1152 bits (596), Expect = 0.0
Identities = 623/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaaatagagacaaaggagctgcagagaaggctccatggataacagcatgtacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gaattctcaaatagagacaaaggagctgcagagaaggctccatggataacagcatgtacg 959
Query: 65 gctcatgcagagaagctgaactccgttcccaggacccacgtcactcataaccacctctaa 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 958 gctcatgcagagaagctgaactccgttcccaggacccacgtcactcacaaccacctctaa 899
Query: 125 cttcgtcttcaaggcctctgtagacacctgtactcatgtgcacgtacacaggtgtgcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cttcgtcttcaaggcctctgtagacacctgtactcatgtgcacgtacacaggtgtgcaaa 839
Query: 185 tgctcacccacatgttcacacacacacacacaatctaaaaaatagattttagcatttaaa 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgctcacacacatgttcacacacacacacacaatctaaaaaatagattttagcatttaaa 779
Query: 245 gacaggataataaagttttattcaaaccttacagccctctttgagtttaatatgtgaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gacaggataataaagttttattcaaaccttacagccctctttgagtttaatatgtgaggc 719
Query: 305 attcattatctactattttttattactatacattttgagatatctgtaggatcatagctt 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 718 attcattatctactattttttattactatacattttgagatatctgtgggatcatagctt 659
Query: 365 aactattttttttattctgaagatggtcaagattgagcatctcaataattacaatatttt 424
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aactattttttt-attctgattatggtcaagattgagcatctcaataattacaatatttt 600
Query: 425 catatgtttgagtgatgagtttttcaactcttgtgaagtggtctccctccccttggacca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 catatgtttgagtgatgagtttttcaactcttgtgaagtggtctccctccccttggacca 540
Query: 485 tgtccttgacagaagatgctcagatgtttgtaagatgccagaagctcaagggagtggtga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtccttgacagaagatgctcagatgtttgtaagatgccagaagctcaagggagtggtga 480
Query: 545 gactcatcaggttctttccatggcttcatgagcagtgagcaattgcagggctgtgattaa 604
|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 479 gactcatcaggttctttccacggcttcacgagcagtaagcaattgcagggctgtgattaa 420
Query: 605 gaagatgccagcaggactgaggtgaagacctt 636
||||||||||||||||||||||||||||||||
Sbjct: 419 gaagatgccagcaggactgaggtgaagacctt 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_f10.g1 MSMg01no538_f10.g1 CHROMAT_FILE:
MSMg01no538_f10.g1 PHD_FILE: MSMg01no538_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:58 2005
(576 letters)
>mm_chr9_83028924_83029898
Length = 975
Score = 1083 bits (560), Expect = 0.0
Identities = 572/576 (99%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 1 aacattttgatttggtctatcttcaacactgatttttaaattactcaggagagcaacatc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattttgatttggcctatcttcaacactgatttttaaattactcaggagagcaacatc 260
Query: 61 gtatttcagcaaaccaggtactgtgaaagcagacgccgtcaatggcatttatttcagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttcagcaaaccaggtactgtgaaagcagacgccgtcaatggcatttatttcagaca 320
Query: 121 ccattgccaaattgcaccctacaggaaagtggaatatatttaacttttgtgtcaacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattgccaaattgcaccctacaggaaagtggaatatatttaacttttgtgtcaacaaac 380
Query: 181 atagcattttaggggagaaacatagaggggaaaaggttatttacctgatttgctaaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcattttaggggagaaacatagaggggaaaaggttatttacctgatttgctaaagga 440
Query: 241 attttaatattatatagagctatattttgatttttcccttctgtgagaaaaatcaaccag 300
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 attttaatattatacagagctatattttgatttt-cccttctgtgagaaaaatcaaccag 499
Query: 301 agaagagcatccacgattaaagcttatgctgtggcaacaggacatttgggatttggttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaagagcatccacgattaaagcttatgctgtggcaacaggacatttgggatttggttac 559
Query: 361 tgaacccccgcccctaaatgcagctcatctgtcgtctactgtgagaactgcttgctccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaacccccgcccctaaatgcagctcatctgtcgtctactgtgagaactgcttgctccct 619
Query: 421 atctgccacagctgtcaataactggaagccagaggtcaatgacaagcccattatttcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctgccacagctgtcaataactggaagccagaggtcaatgacaagcccattatttcatt 679
Query: 481 atgattttcttaataattaaagatttcatcattttaatgatgcccacgcttgactcttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgattttcttaataattaaagatttcatcattttaatgatgcccacgcttgactcttct 739
Query: 541 acccatgccagcaccacgctaacttctctcaggacc 576
||||||||||||||||| ||||||||||||||||||
Sbjct: 740 acccatgccagcaccacactaacttctctcaggacc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
