Query= MSMg01no538_f13.b1 MSMg01no538_f13.b1 CHROMAT_FILE:
MSMg01no538_f13.b1 PHD_FILE: MSMg01no538_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:58 2005
(548 letters)
>mm_chr9_118088745_118089696
Length = 952
Score = 1017 bits (526), Expect = 0.0
Identities = 541/548 (98%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcatgtcagcgttagattattgggagactctccttggcaaacagtttcttag 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcatgtcagcattagattattgggagactctccttggcaaacagtttcttag 264
Query: 65 agcacacagaggctagtatatggttctagaaacaacctaggtatgaactgaaactgccgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcacacagaggctagtatatggttctagaaacaacctaggtatgaactgaaactgccgt 324
Query: 125 gccttgtgaaagcagatacttaagccaaaatcgggagcgttacatgtatagcaacttcaa 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 gccttgtgaaagcagatacttaagccaaaatcgagagcgttacatgtatagcaacttcaa 384
Query: 185 aggctaatgagaaatgattataaacctgccactc----tcttgagttggaccaataactg 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aggctaatgagaaatgattataaacctgccactcgctctcttgagttggaccaataactg 444
Query: 241 tgttcctaattctgtgcgggtgggggaggggggccagcacacatcatccaggatggcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttcctaattctgtgcgggtgggggaggggggccagcacacatcatccaggatggcttc 504
Query: 301 agacttactgcgtggtactacctaaggttgatgttaaactcctaagtgctaaagttacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agacttactgcgtggtactacctaaggttgatgttaaactcctaagtgctaaagttacag 564
Query: 361 gtgtgtaccaccatgcctagcaagtttcttttttctttttctttttttctttttttttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtgtaccaccatgcctagcaagtttcttttttctttttctttttttctttttttttaa 624
Query: 421 gatttatttacttattatacatacgtacactgtaactgtcttcagtcactccagaagagg 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttatttacttattatacataagtacactgtaactgtcttcagtcactccagaagagg 684
Query: 481 gcatcaaattttgttacgaatggttgtgagccaccatgtggttgctgggatttgaacttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcatcaaattttgttacgaatggttgtgagccaccatgtggttgctgggatttgaacttg 744
Query: 541 ggaccttc 548
||||||||
Sbjct: 745 ggaccttc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 952
Length adjustment: 10
Effective length of query: 538
Effective length of database: 942
Effective search space: 506796
Effective search space used: 506796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_f13.g1 MSMg01no538_f13.g1 CHROMAT_FILE:
MSMg01no538_f13.g1 PHD_FILE: MSMg01no538_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:58 2005
(442 letters)
>mm_chr9_118242266_118243106
Length = 841
Score = 712 bits (368), Expect = 0.0
Identities = 396/406 (97%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 37 tataggcgtaaacccccagacctatctctatactttcttttctttcttctttttaaaatc 96
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tataggtgtaaacccccagacctatctctatactttcttttctttcttctttttaaaatc 782
Query: 97 tgtattatattttatttccatgtgtgtgtgtggacatggcatgtgcacacgagggtgtgg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgtattatattttatttccatgtgtgtgtgtggacatggcatgtgcacacgagggtgtgg 722
Query: 157 aggtcagaaaactaacttgcatctggttctttccatgaactatgtggggcctgggctcaa 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aggtcagaaaactaacttgcatctggttctttccatgaactatgtggggcctgggctcaa 662
Query: 217 actcaggtcaccgggcttggtttctctcttgtacctggtaaatctgtcatctgagcctga 276
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actcgggtcactgggcttggtttctctcttgtacctggtaaatctgtcatctgagcctga 602
Query: 277 ccaagtgtcttgcagttgcttgctagagtataacgggtgcgggctgagaggcttgtccgg 336
|||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 601 ccaagtatcttgtagttgcttgctagagtataacgagtacgggctgagaggcttgtccgg 542
Query: 337 tagtttcctcaatcaagctagtgaattttctctcccttttctctcttattaatttcagac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagtttcctcaatcaagctagtgaattttctctcccttttctctcttattaatttcagac 482
Query: 397 ttaaactttccgttcttttgaaagatgtgaggagncnccctcacag 442
|||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct: 481 ttaaactttccgttcttttg-aagatgtgaggagccgccctcacag 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
