BAC Information

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BAC

Clone NameMSMg01-538G02
Chromosome9 (Build37)
Map Location 40,429,912 - 40,579,211
singlet/doubletdoublet
Overlap gene9030425E11Rik, LOC100043076, LOC100043071
Upstream geneOlfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
Downstream geneHspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538G02.T7 (MSMg01no538_g02.b1)MSMg01-538G02.TJ (MSMg01no538_g02.g1)
ACCAG605123AG605124
length735743
length of high quality
(start - end)
660 (36 - 695)588 (67 - 654)
definitionCHROMAT_FILE: MSMg01no538_g02.b1 PHD_FILE: MSMg01no538_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:01 2005CHROMAT_FILE: MSMg01no538_g02.g1 PHD_FILE: MSMg01no538_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,578,696 - 40,579,211)(40,429,912 - 40,430,499)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAC
CTTGCAGGTGTATCTGCCTTCATCACTGGGTTTCAGAGGCTCAATCTGCA
GGGAAGCATCTCCTGCCAGGAAGTTGGAAGCGAAGGCCACTCGGCCCTTC
TGCTCCTCGGTCAAGTTATTGTAGACATGACGGCTGGAATACGTAATAAC
CTGAGGAGACAGACAGAGGCAAAAGGTGGGACTCAACCTTCTCCAGCTAT
CAAGATGAGGAGAGGGCCAGGTGTGTAGTAGTTATCCCAGCAAGCCCGAG
GAAGTAGGATCACAGCTTCCAGGCCAGCCTGGAACTCACCATGTGGACCA
GGCTAGTCTCAAACTCAGAGACCCTCCTGCCTCGCCTGGGGCAAAAGGTA
TGCACCACCACGCAGGGCCTGCGTAGGGTTTATTCATAAAGTCCTAACTA
CTTCATTAAATACTCAGAACGACTCCATTTGGGGTGGCTTGGCTGTGGAC
AGCTGCCATGCACTGAGCATAGTGTTTCCGGAAGTGTAGCAGGAGAGGTT
ACCAGTGCTTGCCTCAGGCTAGAGGATTAGGAGGAGAAATGCCCTTCCAC
ACAACCATTTCTTCTGAATTCCTCTACCACTGGAGTGTGGGCTCTTCAGA
GCACACTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTCAN
NTNGCNNNCTTCTATTTTTTATTTCAATAGTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAATCTAGAAGCAAAACAACCCTTTTGTCTTT
ATATATCATGGCAGGTGTCTGTTCTGGTAACAGAAGGGTTACTGATATAT
CTCCCCTTATCCCTGTCTCCATTGGGAAGATTGTCTTAACTCCTAGGACT
TTATCCTGAGACCACGTGTACTGGCTGGTTTTTGTGTGTCAACTTGACAC
AAGCTGGAGTTATCACAGAGAAAAATCCTCATTTGAAGAAATGCCTCCAT
GAGATCAGACATTTTCTCAATTAGTGATCAAGGGGTGTTGGAGAGGGCCC
ATTGTAGGTGGTGCCACCCCTGGGCTGGTTGGCCTGGGTTCTATAAGAAA
GCAAGCAGAGCAAGCCAGGGGCAGCAATCCAGTAAGCAGCACCCTCCATG
GCCTCTGCATCAGCTTCTACCTCCAAGTACCTGCCCTGAGTGAGTTCCTG
TCCTGATTTCCTTTGGTGATGAACAGCAATGTGGAAATGTGAGCTGAATA
AACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGGTGTCTCACTGCAGCA
ATAGAAACCCTGACTAAGACACCATCGGAGAATAAATCTAGATGCTGTGA
GGATTGTATCAAGTGGTATGAGTGTAGGAGCAGAAGAGAATGGGAGAGAT
GAGGACACTACTTCAGACCTGCCTGCTCTTGGTGCCATGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_g02.b1 MSMg01no538_g02.b1 CHROMAT_FILE:
MSMg01no538_g02.b1 PHD_FILE: MSMg01no538_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
         (660 letters)



>mm_chr9_40578152_40579211
          Length = 1060

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                        
Query: 142  atgacggctggaatacgtaataacctgaggagacagacagaggcaaaaggtgggactcaa 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 atgacggctggaatacgtaataacctgaggagacagacagaggcaaaaggtgggactcaa 1001

                                                                        
Query: 202  ccttctccagctatcaagatgaggagagggccaggtgtgtagtagttatcccagcaagcc 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ccttctccagctatcaagatgaggagagggccaggtgtgtagtagttatcccagcaagcc 941

                                                                        
Query: 262  cgaggaagtaggatcacagcttccaggccagcctggaactcaccatgtggaccaggctag 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  cgaggaagtaggatcacagcttccaggccagcctggaactcaccatgtggaccaggctag 881

                                                                        
Query: 322  tctcaaactcagagaccctcctgcctcgcctggggcaaaaggtatgcaccaccacgcagg 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  tctcaaactcagagaccctcctgcctcgcctggggcaaaaggtatgcaccaccacgcagg 821

                                                                        
Query: 382  gcctgcgtagggtttattcataaagtcctaactacttcattaaatactcagaacgactcc 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  gcctgcgtagggtttattcataaagtcctaactacttcattaaatactcagaacgactcc 761

                                                                        
Query: 442  atttggggtggcttggctgtggacagctgccatgcactgagcatagtgtttccggaagtg 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  atttggggtggcttggctgtggacagctgccatgcactgagcatagtgtttccggaagtg 701

                                                                        
Query: 502  tagcaggagaggttaccagtgcttgcctcaggctagaggattaggaggagaaatgccctt 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  tagcaggagaggttaccagtgcttgcctcaggctagaggattaggaggagaaatgccctt 641

                                                                        
Query: 562  ccacacaaccatttcttctgaattcctctaccactggagtgtgggctcttcagagcacac 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  ccacacaaccatttcttctgaattcctctaccactggagtgtgggctcttcagagcacac 581

                                                
Query: 622  tgctctctctctctctctctctctctctctctctct 657
            ||||||||||||||||||||||||||||||||||||
Sbjct: 580  tgctctctctctctctctctctctctctctctctct 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no538_g02.g1 MSMg01no538_g02.g1 CHROMAT_FILE:
MSMg01no538_g02.g1 PHD_FILE: MSMg01no538_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:01 2005
         (588 letters)



>mm_chr9_40429712_40430699
          Length = 988

 Score = 1137 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaatctagaagcaaaacaacccttttgtctttatatatcatggcaggtgtctgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatctagaagcaaaacaacccttttgtctttatatatcatggcaggtgtctgttctg 260

                                                                       
Query: 61  gtaacagaagggttactgatatatctccccttatccctgtctccattgggaagattgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacagaagggttactgatatatctccccttatccctgtctccattgggaagattgtct 320

                                                                       
Query: 121 taactcctaggactttatcctgagaccacgtgtactggctggtttttgtgtgtcaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactcctaggactttatcctgagaccacgtgtactggctggtttttgtgtgtcaacttg 380

                                                                       
Query: 181 acacaagctggagttatcacagagaaaaatcctcatttgaagaaatgcctccatgagatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaagctggagttatcacagagaaaaatcctcatttgaagaaatgcctccatgagatc 440

                                                                       
Query: 241 agacattttctcaattagtgatcaaggggtgttggagagggcccattgtaggtggtgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacattttctcaattagtgatcaaggggtgttggagagggcccattgtaggtggtgcca 500

                                                                       
Query: 301 cccctgggctggttggcctgggttctataagaaagcaagcagagcaagccaggggcagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccctgggctggttggcctgggttctataagaaagcaagcagagcaagccaggggcagca 560

                                                                       
Query: 361 atccagtaagcagcaccctccatggcctctgcatcagcttctacctccaagtacctgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccagtaagcagcaccctccatggcctctgcatcagcttctacctccaagtacctgccc 620

                                                                       
Query: 421 tgagtgagttcctgtcctgatttcctttggtgatgaacagcaatgtggaaatgtgagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagtgagttcctgtcctgatttcctttggtgatgaacagcaatgtggaaatgtgagctg 680

                                                                       
Query: 481 aataaaccctttcctccccaacttgcttcttggtcatggtgtctcactgcagcaatagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataaaccctttcctccccaacttgcttcttggtcatggtgtctcactgcagcaatagaa 740

                                                           
Query: 541 accctgactaagacaccatcggagaataaatctagatgctgtgaggat 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accctgactaagacaccatcggagaataaatctagatgctgtgaggat 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)