Query= MSMg01no538_k16.b1 MSMg01no538_k16.b1 CHROMAT_FILE:
MSMg01no538_k16.b1 PHD_FILE: MSMg01no538_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:22 2005
(665 letters)
>mm_chr9_104931855_104932920
Length = 1066
Score = 1266 bits (655), Expect = 0.0
Identities = 661/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 4 ggaattcc-aaatctgcaaaggaaaccctcatgatttgaagtttattaccttagcttgat 62
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaaaactgcaaaggaaaccctcatgatttgaagtttattaccttagcttgat 263
Query: 63 tgccttcatccccatcctcagctacatgcagctacacgtcgctgctgtgacctgcagctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgccttcatccccatcctcagctacatgcagctacacgtcgctgctgtgacctgcagctc 323
Query: 123 gcgggtcctacacccctgaaatgacttcagagcagagacagacccccagacaacaccttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgggtcctacacccctgaaatgacttcagagcagagacagacccccagacaacaccttc 383
Query: 183 cagtttaagctaggcattgacaaaaaaaaatggaagattgttgacaagaactaaaggggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtttaagctaggcattgacaaaaaaaaatggaagattgttgacaagaactaaaggggg 443
Query: 243 actggaaacaaaagaattgtcccaagggagaactgccccaagcaggacaaggacacggtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actggaaacaaaagaattgtcccaagggagaactgccccaagcaggacaaggacacggtg 503
Query: 303 cccatcttatactctgcgctgtatgtgcatttgcagtctccctggggtgacacaggcaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccatcttatactctgcgctgtatgtgcatttgcagtctccctggggtgacacaggcaga 563
Query: 363 gtgacaggaggattttcacctaccttatcttcatgggtttcaaattagattttgaaaaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgacaggaggattttcacctaccttatcttcatgggtttcaaattagattttgaaaaac 623
Query: 423 atttcattatccaaactaatctactcagaattcaataagccataaataaaagggaggcga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttcattatccaaactaatctactcagaattcaataagccataaataaaagggaggcga 683
Query: 483 ggagctgatatttcatagacaccagtaacccatgagttgcctttcttttgttgctctgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggagctgatatttcatagacaccagtaacccatgagttgcctttcttttgttgctctgtg 743
Query: 543 tgctaacatggtgcgttaaagtgcatagggacaggctctgaactatgtggttctgggcag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctaacatggtgcgttaaagtgcatagggacaggctctgaactatgtggttctgggcag 803
Query: 603 attgcttaacttctcagtgacacagacttttagtgagatgaggcaaatgctacagatgca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgcttaacttctcagtgacacagacttttagtgagatgaggcaaatgctacagatgca 863
Query: 663 ttg 665
|||
Sbjct: 864 ttg 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k16.g1 MSMg01no538_k16.g1 CHROMAT_FILE:
MSMg01no538_k16.g1 PHD_FILE: MSMg01no538_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:22 2005
(496 letters)
>mm_chr9_105106851_105107746
Length = 896
Score = 951 bits (492), Expect = 0.0
Identities = 495/496 (99%)
Strand = Plus / Minus
Query: 1 atctctgattgatgcagcatcacctgtggcaagggtgggttattagctttgcttctccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atctctgattgatgcagcatcacctgtggcaagggtgggttattagctttgcttctccga 448
Query: 61 ttgcccttgactgtcaccttgagtgtataggaatgctgatgaagtcaataagggatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgcccttgactgtcaccttgagtgtataggaatgctgatgaagtcaataagggatatgc 388
Query: 121 attgtttttttttttccccagacacaaagactattaccaatgcagtgacagacatgtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attgtttttttttttccccagacacaaagactattaccaatgcagtgacagacatgtctc 328
Query: 181 ctggaccaatggttttcaacagtgcagtggctcggaccaagatgaagcgcatgaaggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctggaccaatggttttcaacagtgcagtggctcggaccaagatgaagcgcatgaaggagt 268
Query: 241 aagtagcgtgctgcctgcctccaaagtgatgctagaggaccaaccgtttgatctgatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagtagcgtgctgcctgcctccaaagtgatgctagaggaccaaccgtttgatctgatcat 208
Query: 301 gtgatcttgtcttagttcccttaggtgtcataactaagcgcctgatgattggataatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtgatcttgtcttagttcccttaggtgtcataactaagcgcctgatgattggataatttc 148
Query: 361 taaacagtaaaaagccatttttcataactgtggggattggggagacaaagatcacagtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 taaacagtaaaaagccatttttcataactgtggggattggggagacaaagatcacagtgg 88
Query: 421 gaggatttccttgtttggtgataactggatgtctctatttccaagatggcaccttatcac 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 taggatttccttgtttggtgataactggatgtctctatttccaagatggcaccttatcac 28
Query: 481 ttcattctctcacggt 496
||||||||||||||||
Sbjct: 27 ttcattctctcacggt 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
