Query= MSMg01no538_l20.b1 MSMg01no538_l20.b1 CHROMAT_FILE:
MSMg01no538_l20.b1 PHD_FILE: MSMg01no538_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:27 2005
(352 letters)
>mm_chr9_77457095_77457846
Length = 752
Score = 447 bits (231), Expect = e-130
Identities = 234/235 (99%)
Strand = Plus / Plus
Query: 1 attctctgacatctggaggaggagagagaagctatagaattgagttcatcttccaggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctctgacatctggaggaggagagagaagctatagaattgagttcatcttccaggggc 260
Query: 61 atgaacatacctctatctgtgtgctcggaagacagtgattcctaaacatgtctcatacga 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaacatgcctctatctgtgtgctcggaagacagtgattcctaaacatgtctcatacga 320
Query: 121 tcctcatcccctgcggatagaggagactggcctccgcatcaacaggagaccaaggagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcatcccctgcggatagaggagactggcctccgcatcaacaggagaccaaggagtca 380
Query: 181 acaaaacgaagcccagctttatcacacacacacacacacacacacacacacacac 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaacgaagcccagctttatcacacacacacacacacacacacacacacacac 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_l20.g1 MSMg01no538_l20.g1 CHROMAT_FILE:
MSMg01no538_l20.g1 PHD_FILE: MSMg01no538_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:28 2005
(529 letters)
>mm_chr9_77609803_77610731
Length = 929
Score = 673 bits (348), Expect = 0.0
Identities = 360/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 1 agaatattatgcagaattcaatgttatgcaggagtatcctaaagtatttgcactccgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agaatattatgcagaattcaatgttatgcaggagtatcctaaagtatttgcactccgatt 304
Query: 61 aagttctaattcaggggcactgggtggaagacacacgagtatgtagacttttctggagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagttctaattcaggggcactgggtggaagacacacgagtatgtagacttttctggagct 244
Query: 121 actcataaactataaaaactactttttaaaaaaatcctctcttgccgggcgtggtggcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 243 actcataaactataaaaactactttttaaaaaaatcctctcttgccgggtgtggtggcgc 184
Query: 181 acgcctttaatcccagcactcgggaggcagagacaggcagatttctgagttcaaggccag 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 183 acgcctttaatcccagcactcgggaggcagagacaggcggatttctgagttcaaggccag 124
Query: 241 cctggtctatagagtgagttccaggacagccagggctatacagagtaaaaccaaaaatat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cctggtctacagagtgagttccaggacagccagggctatacagagtaaaaccaaaaatat 64
Query: 301 aaaaaattaaaaaataaaataaataaataaataaatcctctctctaaataattatatttc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaaaaattaaaaaat-aaataaataaataaataaatcctctctctaaataattatatttc 5
Query: 361 agga 364
||||
Sbjct: 4 agga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
