BAC Information

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BAC

Clone NameMSMg01-539C24
Chromosome9 (Build37)
Map Location 57,381,057 - 57,381,387
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a
Downstream gene2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539C24.T7 (MSMg01no539_c24.b1)MSMg01-539C24.TJ (MSMg01no539_c24.g1)
ACCAG605739AG605740
length756769
length of high quality
(start - end)		387 (50 - 436)601 (72 - 672)
definitionCHROMAT_FILE: MSMg01no539_c24.b1 PHD_FILE: MSMg01no539_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005CHROMAT_FILE: MSMg01no539_c24.g1 PHD_FILE: MSMg01no539_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAGTTTTTCTTTTCTGTTGGAAAAAATACAAAACCTCTCCCC
CTAGATAACACACTTCCTTCCCTCCACTCTGAAGTTAGAACATCCTTAAT
ATAAACAGGCTGATTTTAGTTCAGCAGTTTTTTTCCATAATCCAATGTCT
CTCAACAGCTGTTGTTTTTTCATTACCATTTAAATTTTTTAAAGTAAATA
AAGCACTATGTAAACTATCTCTGGGGACCCCTTCCTGTTTGCTAAGCACC
CTTTTAAAATATGGCTAGATCTCTCTACAAATGCTTGTCCCATAAGATTA
TGTGGTATACCCGTAATATGCTTTATATTTTAATCTGTAAAACATTGCTT
CATATTATTAGTGACATGTGCNTGAAGCATTGTCCGGCTCTCAATTTTGT
ACAAGCCATTCTCCCTTAAAAAGGTCAAAAAATTCTTCTAAAAAAAGGGG
GGGAGAAGAAAAAAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCNCCCCC
NCCNTTCTTTTCTTTCTTCTTCTCCTTCACTTTTATTGTTATTTTTATTT
GTCCTCACTTCCTCATATTCTTTCTGCCATTTCTTCGTCTTTAACATTTA
AATTATAATATTCTTGTCCCCCCTTATCCACCCTTATTACTTCTTCTACC
TTATAATAATTCACTCTATCTTTTACTTATATCTTCCATTTAATACTTTA
TTTTTN

TTTAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTAAGAACAGGACATCAGCATGAGTCCC
TGGGATGAGTCATCAAAATAATATCTGGAGGAACATGAAGAGTGTCTGGA
GGAAACTAAAAAGCAACAGCATGGGTTTATTTTAAAATATTTTTTCTTCT
TACTCCTCTTCCTCCTCCTCCTTCTTTTCTTCCTTTTTTTTGAGACAGGG
TTTCTCTGTGTAGCCCTGACTGTCTGGAAATTGCTCTGTAGACCAGGCTG
GCCTCAAACTCAGAGGTCTACCTGCCTCTTCTTTCCAAGTACTGGGACTA
AAAGTGTGTGCCATCACCCCCTGGCCAATTCTTTTTTAACTTATTTATTT
TATTTATATGAGTACACTGTCGTTGTCTTCAGACACACCAGAAGATCCCA
TTACAGATGGTTGTGAGCCACCATATGGTTGCTGAGAATTGAACTCAGGA
CCTCTGGAAAAGCAATCAGTGCTCTGAACTGCTAAGCCATCTCACCAGTT
CCCCAATTCTAGTTCTTAACCAGGGTATGAGAGGTCTTCTGGTAGGGGAA
TCAAATTTTATTAAAGGTGAGAGTAAAACTAGACCATAGTAGGTTTCATG
GTTGAACAAATGTTGAACATGCTGATGTTCACATTGAACAAGTTTGATGT
ACATCTTTAAAACAACAAAAATCAAACTTACTAAAACTCCCCGCAGCATC
TACATTTAACTTAATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_c24.g1 MSMg01no539_c24.g1 CHROMAT_FILE:
MSMg01no539_c24.g1 PHD_FILE: MSMg01no539_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:03 2005
         (601 letters)



>mm_chr9_57381057_57382057
          Length = 1001

 Score =  574 bits (297), Expect = e-168
 Identities = 315/331 (95%), Gaps = 16/331 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagaacaggacatcagcatgagtccctgggatgagtcatcaaaataatatctggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctaagaacaggacatcagcatgagtccctgggatgagtcatcaaaataatatctggagg 272

                                                                       
Query: 61  aacatgaagagtgtctggaggaaactaaaaagcaacagcatgggtttattttaaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aacatgaagagtgtctggaggaaactaaaaagcaacagcatgggtttattttaaaatatt 212

                                                                       
Query: 121 ttttcttcttactcctcttcctcctcctccttcttttcttcc----------------tt 164
           ||||||||||||||||||||||||||||||||||||||||||                ||
Sbjct: 211 ttttcttcttactcctcttcctcctcctccttcttttcttcctttttttttttttttttt 152

                                                                       
Query: 165 ttttttgagacagggtttctctgtgtagccctgactgtctggaaattgctctgtagacca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttttttgagacagggtttctctgtgtagccctgactgtctggaaattgctctgtagacca 92

                                                                       
Query: 225 ggctggcctcaaactcagaggtctacctgcctcttctttccaagtactgggactaaaagt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ggctggcctcaaactcagaggtctacctgcctcttctttccaagtactgggactaaaagt 32

                                          
Query: 285 gtgtgccatcaccccctggccaattcttttt 315
           |||||||||||||||||||||||||||||||
Sbjct: 31  gtgtgccatcaccccctggccaattcttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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