TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAGTCTTTAAAAATAAATAGACAATTTATATGTGTCCACACAA
CACTGTGAATTTTCAATACATGTGTACATTTTCTGGATTTTTCTCTGGCT
GCCCTGGCCCAAGCTATTACCTCCATTCAAGCATAACAATACCAACATAC
TGACAGGAAAGGCCTTGATTGTCTTTTCTGCTATAAGGCATTTTTATTGC
TTATTCATTCTACAGCATCTGAAGAAAGCTCCTAGGTGTCAGATATTGAT
TTTCTGATATTCACTATCAGAATTTCAACTGAATTTTACTCTTAATTTGT
GTTTTCATTGAATTATTAAACTCCAGGTATGTAGTTCGTGGTGATGACAT
GGTATTAACTTAAAGGCCTTACAGAGATGTAAACTGATGATTTTGCTGTC
ATAAATACTGATGTAACCCATCAGGTTTCACTTGGTATTCATTTTCTATA
TGCAGCCACTTGTCTCTAAAATGAAAAATTCCTTATCTAGTCCTGAGAAA
AATACCTTGACCTAGCACAGTGTTTGGCCTTCTGTTAGTTAAGGTCCTAT
GACCAATGTTACCATGTAATCTTTTGCTATCACTCTGATCTTATCACTGC
TCTACCTGGTCCTCATTCCATGAAGCTAGGCACCTGTCTTGGATGCTATT
TATATATCCTAACAAGAACACTCTTGATCCAGAAGCTAGCTTTGCTGGCT
CCTCCTGACTCACAGCTTTTGATTTCTAGCTGGAN

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATA
TGTTGGATATTAGTCCCCTATCTAATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGATGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCA
GAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAG
CACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCT
TCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATA
CGTATAGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAG
CACCAATTGTTGAAAATGCTGTCTTTCCTCCACTGGATGGTTTTAGCTCC
CTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTT
CAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCA
GTTTTTATCACAATTGCTCTGTAATAAAGCTTTAGGTCAGGCATGGTGAT
TCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTT
TTTTGTTATTCCAGATGAN

Query= MSMg01no539_f20.b1 MSMg01no539_f20.b1 CHROMAT_FILE:
MSMg01no539_f20.b1 PHD_FILE: MSMg01no539_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:17 2005
         (628 letters)



>mm_chr9_25983300_25984327
          Length = 1028

 Score = 1176 bits (608), Expect = 0.0
 Identities = 620/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtagtctttaaaaataaatagacaatttatatgtgtccacacaacactgtgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtagtctttaaaaataaatagacaatttatatgtgtccacacaacactgtgaa 264

                                                                       
Query: 65  ttttcaatacatgtgtacattttctggatttttctctggctgccctggcccaagctatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttcaatacatgtgtacattttctggatttttctctggctgccctggcccaagctatta 324

                                                                       
Query: 125 cctccattcaagcataacaataccaacatactgacaggaaaggccttgattgtcttttct 184
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 cctccatccaagcataacaataccaacatactgacaggaaaggccttggttgtcttttct 384

                                                                       
Query: 185 gctataaggcatttttattgcttattcattctacagcatctgaagaaagctcctaggtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctataaggcatttttattgcttattcattctacagcatctgaagaaagctcctaggtgt 444

                                                                       
Query: 245 cagatattgattttctgatattcactatcagaatttcaactgaattttactcttaatttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagatattgattttctgatattcactatcagaatttcaactgaattttactcttaatttg 504

                                                                       
Query: 305 tgttttcattgaattattaaactccaggtatgtagttcgtggtgatgacatggtattaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgttttcattgaattattaaactccaggtatgtagttcgtggtgatgacatggtattaac 564

                                                                       
Query: 365 ttaaaggccttacagagatgtaaactgatgattttgctgtcataaatactgatgtaaccc 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 ttaaaggccttacagagatgtaaactgatgattttgctgtcatgaatactgatgtaaccc 624

                                                                       
Query: 425 atcaggtttcacttggtattcattttctatatgcagccacttgtctctaaaatgaaaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcaggtttcacttggtattcattttctatatgcagccacttgtctctaaaatgaaaaat 684

                                                                       
Query: 485 tccttatctagtcctgagaaaaataccttgacctagcacagtgtttggccttctgttagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccttatctagtcctgagaaaaataccttgacctagcacagtgtttggccttctgttagt 744

                                                                       
Query: 545 taaggtcctatgaccaatgttaccatgtaatcttttgctatcactctgatcttatcactg 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 taaggtcctatgaccaatgttaccatgtaatcttttgctatcactctgatctgatcactg 804

                                   
Query: 605 ctctacctggtcctcattccatga 628
           ||||||||||||||||||||||||
Sbjct: 805 ctctacctggtcctcattccatga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)