Query= MSMg01no539_f23.b1 MSMg01no539_f23.b1 CHROMAT_FILE:
MSMg01no539_f23.b1 PHD_FILE: MSMg01no539_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:18 2005
(584 letters)
>mm_chr9_93262913_93263896
Length = 984
Score = 1046 bits (541), Expect = 0.0
Identities = 574/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 1 agatggctcaatgattaacagcactaactgctcttccagatgtcctgagttcttcaattc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agatggctcaatgattaacagcactgactgctcttccagatgtcctgagttcttcaattc 260
Query: 61 ccagcagccatatgatggcttacagccatctataatgggatgatccaatgccctcttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcagccatatgatggcttacagccatctataatgggatgatccaatgccctcttctg 320
Query: 121 gtgtatctgaagacagctactgtgtactcatatatacattaaatacatctttaaaaaaag 180
|||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||
Sbjct: 321 gtgtatctgaagacagctacagtttactcatatatacattacatacatctt-aaaaaaag 379
Query: 181 -aattcattttagagggacttcattaacctagatcaaacctagtggagtctgacatgaag 239
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 gaattcattttagagggacttcattaacctagattaaacctagtggagtctgacatgaag 439
Query: 240 aggtttattgccagcatatttaaaatcataataatttgaaaaaaaatgttgcctgttata 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 aggtttattgccagcatatttaaagtcataataatttgaaaaaaaatgttgcctgttata 499
Query: 300 atacaatcactgtatgcaagaaaacatgattacttcaaaactccactcatggtactcatg 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 atacaatcactgtatgcaagaaaacatgattacttcaaaacttcactcatggtactcatg 559
Query: 360 gtaggctaactgtactcactcatggaccagggaagaatctgacctggttttggtcataca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtaggctaactgtactcactcatggaccagggaagaatctgacctggttttggtcataca 619
Query: 420 gatagcacaggggtctttgggactcttagtcccctccagtactggttataggagattaat 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 gatagcacaggggtctttgggactattagtcccctccagtactggttataggagattaat 679
Query: 480 atgacttggcacaacaaatagcaaagagcaccaggctgttaatcatccccaattcccagc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgacttggcacaacaaatagcaaagagcaccaggctgttaatcatccccaattcccagc 739
Query: 540 tttctagatggaagaagagatttgcatctttctcatgggaaagac 584
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 tttctagatggaagaacagatttgcatctttctcatgggaaagac 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_f23.g1 MSMg01no539_f23.g1 CHROMAT_FILE:
MSMg01no539_f23.g1 PHD_FILE: MSMg01no539_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:18 2005
(625 letters)
>mm_chr9_93427252_93428276
Length = 1025
Score = 1164 bits (602), Expect = 0.0
Identities = 620/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 1 tggagggggaaccaggaaagggggcaacatttggaatataagtaagtacaataattaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tggagggggaaccaggaaagggggcaacatttggaatataagtaagtacaataattaatt 839
Query: 61 aaaaacaaattttaaaaaaagtctcaaatggaaacaaagcgcaatgtgtcttttattcac 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaaaacaaatttaaaaaaaagtctcaaatggaaacaaagcgcaatgtgtcttttattcac 779
Query: 121 ttctgctccttccttgggaatattcattgaattgcacatcatttttgcagttaagtctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttctgctccttccttgggaatattcattgaattgcacatcatttttgcagttaagtctaa 719
Query: 181 attattgctacaaacagctaacagttatgacatcattttgcatccccctattgcagtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 attattgctacaaacagctaacagttatgacatcattttgcatccccctattgcagtgaa 659
Query: 241 cagagaagcaactctcacagttatacctgagtctgagaaaccctcggtgaccaccaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cagagaagcaactctcacagttatacctgagtctgagaaaccctcggtgaccaccaagac 599
Query: 301 caatctagagtcaagacaaaagtttgtcagtgaagaaagataagtggtttgctcgttttt 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 598 caatctagaatcaagacaaaagtttgtcagtgaagaaagataagtggtttgctcg-tttt 540
Query: 361 attctcttgttgagctttataattctgaattgtagattataacagtgcacacagagagat 420
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 attcttttgttgagcttcataattctgaattgtagattataacagtgcacacagagagat 480
Query: 421 gattctattcaaaagcagtgaattgtgttacattgtgtggagtgagacacattttcct-a 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 479 gattctattcaaaagcagtgaattgtgttacattgtgtggagtgagacacattttcctaa 420
Query: 480 aaaaaaaagagaaaaagtcacagattacagttttaatattgtagctgaatataaagcagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaaaaaaagagaaaaagtcacagattacagttttaatattgtagctgaatataaagcagt 360
Query: 540 cactaaggaacaataggttaatcaatataccaaacaatttcatctaataaaaggaaatcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cactaaggaacaataggttaatcaatataccaaacaatttcatctaataaaaggaaatcc 300
Query: 600 cactcacaataattacccccaatggg 625
||||||||||||||||||||||||||
Sbjct: 299 cactcacaataattacccccaatggg 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
