ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTGTCATTATCATGGTATATAGAGGCGAAGGGTGCTGCACACA
GCAAGTGCTCTAGGCCGTCATTTCTTTCTACGTGTAGCAGCTTTATTGGG
ATGGCATGGATCTAACCCAAGAAATAACCATCAACAGGCACAAAAAGCAT
CACAAGAAACCAACGCCTCTTTCTAGAGCGAGGCCACAGCAGAGATGGCA
TCCTGGAGAAGAGCTGAGAGAAGAGGAAGTGGGGAGAGGCCCCACACACC
AGCACACTGTGGTCAAGTTGGGGAAAGACTGATCTGCAGGGTAGGAGGCA
CTCACAGGTCCCTGTGACCCGAGAACCACGGAGCAGACACTTGGGCTAGA
GAGTGATCGTCTTTCCCCCAGGACTCTACTTCGGTCTTTAGCTCCACAGC
TTTGGACTAGACAAGCAGCTGGATTATAAAGTGAGCCATCTTATCTCCCT
AACCACAGGGATGTCTTTCTGTGGTGAAAGACTAACGGGCATCACCAATG
AGGGAAAGGGGCAGTGGGAGAGTGTATGTAGAAAGAATGTGACCAATTTC
ATTGTGTTTTGGCTTAGAAAGGGAATACTTGGAGATGTTCACTTCAAGTC
TTGCAAAGAACTAGAACATTGTTTCTATATAACCAGGCCCTCTTGTCTTA
CCTGTTTTCTCCTTTTATATATATGGGCATTTCTTTTTCTTTTTTCTTTT
TCTTTCCTTTTTTTTTTTTAN

TCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAACTCTGTACCCATTT
TTTAATAGGTTTTTATTTGGTTTTCTGGAGTCTAACTTCTTGAGTTCTTT
GTACATATTGGATATTAGCCCTCTATTGGATTTAAAATCGGTAAAGATCT
TTTCCCAATCAGTTGGTTGCCTTTTTGTCTTATTGACAGTGTTCTTTGCC
TTACAGAAGCTTTGCAATTTTATGAGATTCCATTTGTTAATTCTTGATCT
TACAGTAAAAGCCATTGGTTTTGTGTTCAGGAATTTTTCCCCTGTGCCTA
TATTCAAGGCTCTTTTCCACTTTCTCTTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAATTCTTTGATCCACTTAGACTTAAGCTTTGTACAAGGAG
ATAAGAATGGATCAATTCGCATTCTTCTACATGCTTGAGCCAGCACCATT
TGTTGAAAATGCTGTCTCCTGGGGAATCCATCCCATAAACAGCCACCAAA
ACCAAACACTACTGTGGATGCCAACAAGACCTTGCTGACAGGAGCCTGAT
ATAGCTGCCTGAGAGGCTCTGCCTGTGCCTAACAAATACAGAAGTGGATG
CTCACAGCCATCCATTGGACGGAGTGCAGGATCCCCAATGAAGGAGCTAG
AGAAAGTACCCAAGGTGCTGAAGGGGTTTGCAACCCCATAGGAGGA

Query= MSMg01no539_k16.b1 MSMg01no539_k16.b1 CHROMAT_FILE:
MSMg01no539_k16.b1 PHD_FILE: MSMg01no539_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:42 2005
         (654 letters)



>mm_chr9_69183506_69184559
          Length = 1054

 Score = 1226 bits (634), Expect = 0.0
 Identities = 646/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgtcattatcatggtatatagaggcgaagggtgctgcacacagcaagtgct 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 854 gaattcctctgtcattatcatggtatatagaggcgaagggtcctgcacacagcaagtgct 795

                                                                       
Query: 65  ctaggccgtcatttctttctacgtgtagcagctttattgggatggcatggatctaaccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctaggccgtcatttctttctacgtgtagcagctttattgggatggcatggatctaaccca 735

                                                                       
Query: 125 agaaataaccatcaacaggcacaaaaagcatcacaagaaaccaacgcctctttctagagc 184
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 734 agaaataaccatcaacaggcacaaaaagcatcaaaagaaaccaacgcttctttctagagc 675

                                                                       
Query: 185 gaggccacagcagagatggcatcctggagaagagctgagagaagaggaagtggggagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaggccacagcagagatggcatcctggagaagagctgagagaagaggaagtggggagagg 615

                                                                       
Query: 245 ccccacacaccagcacactgtggtcaagttggggaaagactgatctgcagggtaggaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccccacacaccagcacactgtggtcaagttggggaaagactgatctgcagggtaggaggc 555

                                                                       
Query: 305 actcacaggtccctgtgacccgagaaccacggagcagacacttgggctagagagtgatcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 actcacaggtccctgtgacccgagaaccacggagcagacacttgggctagagagtgatcg 495

                                                                       
Query: 365 tctttcccccaggactctacttcggtctttagctccacagctttggactagacaagcagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctttcccccaggactctacttcggtctttagctccacagctttggactagacaagcagc 435

                                                                       
Query: 425 tggattataaagtgagccatcttatctccctaaccacagggatgtctttctgtggtgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggattataaagtgagccatcttatctccctaaccacagggatgtctttctgtggtgaaa 375

                                                                       
Query: 485 gactaacgggcatcaccaatgagggaaaggggcagtgggagagtgtatgtagaaagaatg 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gactaacaggcatcaccaatgagggaaaggggcagtgggagagtgtatgtagaaagaatg 315

                                                                       
Query: 545 tgaccaatttcattgtgttttggcttagaaagggaatacttggagatgttcacttcaagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgaccaatttcattgtgttttggcttagaaagggaatacttggagatgttcacttcaagt 255

                                                             
Query: 605 cttgcaaagaactagaacattgtttctatataaccaggccctcttgtctt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttgcaaagaactagaacattgtttctatataaccaggccctcttgtctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)