BAC Information

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BAC

Clone NameMSMg01-540A11
Chromosome9 (Build37)
Map Location 39,557,397 - 39,557,964
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150
Downstream geneOlfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540A11.T7 (MSMg01no540_a11.b1)MSMg01-540A11.TJ (MSMg01no540_a11.g1)
ACCAG606378AG606379
length734708
length of high quality
(start - end)		682 (53 - 734)627 (82 - 708)
definitionCHROMAT_FILE: MSMg01no540_a11.b1 PHD_FILE: MSMg01no540_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:10 2005CHROMAT_FILE: MSMg01no540_a11.g1 PHD_FILE: MSMg01no540_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTGTGGGAAAGGAAGAAAAATTAGCACAGGTGGTGTC
TCCTGTCCTATCACATATGGAAGTGTGAAACCAAGGTCAAGCAGTTCCAA
TCATGTATATTTAATGTGATGGCTACTGTGTATCTCATCAGTCAAGACAG
GAGAGGTAAAAAATATAATTCTTGGAAGTAGATAAATGTAAGAAGTGTCT
ATCCCTATTCATGATCTAAACTACGAGAATACATTGGTATCTATTTCATG
AACAACCAAAGAAATATCTGATGGTTTTATTGAAAATTTCCAAGAACTTT
TCAAGCCTAATTTGTAAATATCTCAGTCTATGTACAGAGAAACTACATTC
CTATGTCACAATCATTGTAACACACATACATACAGACATATACACACACA
AAGACATTAAGAATTGAAAGATTCAATATTGTGGGAAAAAGTTTCCTAAA
CTGATATACAATTTTAGTTTCATCCTTATAAAAATCTCAGCTCTTTCTCT
GGCATGTAATGATCATAAAATCTGGCAAACATATAAGGGACATGGAATAA
TCAGAAGAAATGTGGACAAGATGAAGGATTTTTTATTTTATTTTACTTAT
TTTACTTACTCATTTATGTTTTTTGGAGACAGGGTCTAGTTATGTAAGCC
TGGTATCCCAAACTAATAGATCCACCACAGCTGG

TAATTATAACATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTTGGTAACAAAATAT
GGCCATTTTGGACTTATCTTTCCCATTTCTGGGAAACCTTACTAGGATCA
CTTTTATATATTTTAGGACGTTTCCACTGAACGTTTCCATATCACCCCTC
AACTGCCCATCGATAAGAGGACTTTCTCCCCACATTCCCTTCCTCAACAC
TATCTCCTCACCTGACCTTTCCAGTTCATATGCCCCCACTTTAAGCCCCA
ATCCAATCATAAGATATATTCTATTTTCTCTTCCCAGGGAGATACATGTG
TCATAACCTAGTCGCTACCTCTGTGCCTACCTTCTCTGGGTCTACGGATT
GTAGGCTGGTCATCATTTATCTAATGGCTAATATTCTCATATAAATTAAT
ACATACCATATTGAAATTTCTGGGTCTGGGTTACCTAACTTGGGATAATT
GTGTCTAGTTCCATCTATTTGCTTGAAATTTCATGATGTCATCTTTTTAC
CAGCTGTGTGATACTCCTTTCTGTAAATGTAGCATGTTATCTTTACTCAT
TCTGTTGATGGGTATCTAGGTTGTTTCTAGTTTCTGGTAATTATGATTTA
TGATGGAATCTCCACCTCATTTTTAATTGTATTATCTATTTTTTAAATAT
CTAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_a11.b1 MSMg01no540_a11.b1 CHROMAT_FILE:
MSMg01no540_a11.b1 PHD_FILE: MSMg01no540_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:10 2005
         (682 letters)



>mm_chr9_39557397_39558479
          Length = 1083

 Score = 1067 bits (552), Expect = 0.0
 Identities = 564/568 (99%), Gaps = 1/568 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctgtgggaaaggaagaaaaa-ttagcacaggtggtgtctcctgtcctatcac 62
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 568 ggaattccctgtgggaaaggaagaaaaagttagcacaggtggtgtctcctgtcctatcac 509

                                                                       
Query: 63  atatggaagtgtgaaaccaaggtcaagcagttccaatcatgtatatttaatgtgatggct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atatggaagtgtgaaaccaaggtcaagcagttccaatcatgtatatttaatgtgatggct 449

                                                                       
Query: 123 actgtgtatctcatcagtcaagacaggagaggtaaaaaatataattcttggaagtagata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 actgtgtatctcatcagtcaagacaggagaggtaaaaaatataattcttggaagtagata 389

                                                                       
Query: 183 aatgtaagaagtgtctatccctattcatgatctaaactacgagaatacattggtatctat 242
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatgtaagaagtatctatccctattcatgatctaaactacgagaatacattggtatctat 329

                                                                       
Query: 243 ttcatgaacaaccaaagaaatatctgatggttttattgaaaatttccaagaacttttcaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcatgaacaaccaaagaaatatctgatggttttattgaaaatttccaagaacttttcaa 269

                                                                       
Query: 303 gcctaatttgtaaatatctcagtctatgtacagagaaactacattcctatgtcacaatca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcctaatttgtaaatatctcagtctatgtacagagaaactacattcctatgtcacaatca 209

                                                                       
Query: 363 ttgtaacacacatacatacagacatatacacacacaaagacattaagaattgaaagattc 422
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 208 ttgtaacacacatacatacagacacatacacacacaaagacattaagaattgaaagattc 149

                                                                       
Query: 423 aatattgtgggaaaaagtttcctaaactgatatacaattttagtttcatccttataaaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aatattgtgggaaaaagtttcctaaactgatatacaattttagtttcatccttataaaaa 89

                                                                       
Query: 483 tctcagctctttctctggcatgtaatgatcataaaatctggcaaacatataagggacatg 542
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 88  tctcagctctttctctggcatgtaatgatcataaaatctgacaaacatataagggacatg 29

                                       
Query: 543 gaataatcagaagaaatgtggacaagat 570
           ||||||||||||||||||||||||||||
Sbjct: 28  gaataatcagaagaaatgtggacaagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space:   721056
Effective search space used:   721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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