BAC Information

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BAC

Clone NameMSMg01-540B15
Chromosome9 (Build37)
Map Location 123,850,275 - 123,850,976
singlet/doubletsinglet
Overlap genenone
Upstream gene1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399
Downstream geneCcr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540B15.T7 (MSMg01no540_b15.b1)MSMg01-540B15.TJ (MSMg01no540_b15.g1)
ACCAG606432AG606433
length747775
length of high quality
(start - end)
706 (42 - 747)---
definitionCHROMAT_FILE: MSMg01no540_b15.b1 PHD_FILE: MSMg01no540_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:16 2005CHROMAT_FILE: MSMg01no540_b15.g1 PHD_FILE: MSMg01no540_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTGTTATCCCACTGACTTGTCCTTAAATATTCGTAAAAGCTAAAGAG
GCTTTTTTTGCCATCTGGTATGCTTTCAGGGTTTGGGAGTCATTATCTTT
GAAAGGTAAACCCATAAGGAGGTAGGTCCGAATCACCCTGTGACCATGGG
AATTTAGCCTAGGTCTCTTGTTCCCGGCTGTCAAAGATGGAAATGATGCT
GTGCTGGCTCTGAGCACAGAGGCAAGCATCATGCCTCTGTATTCTTGGAA
TCTAACAGCCACCTTGTCGATAAGGTCAAATAAGCCTGTAAGATGGTAAC
TAAGATGTCTATTGCCCCACCAATAGTCAGCCTCACTTAACCTGAGACTA
GATGGTGTTTCATGAGTGGATTCAGCGAAAGACCACAGAACTGCTTGCCC
AGTTAAGCTTGGCTCACATGATGAACTTTATAACTGTTAATGATAATAAT
TAATTGGGCTTTAAACCATTAGCTTTAAGTTGGCTTATTAGGCAATGATT
TGAAGCTATGTCTTGTTAAAGAGCACCCTTCCTGTCTTGAGATCATAGAG
GGTCATCTATATCCTCACACTTTCACCATTTTGCCTTCATGTTTAAATAT
ATAGTCAATCTGAAATTAATGTGTATTACAAATGCGGACCTAGTAGATAT
CTGTTAATATTTCCGGTAGTGTTAGATGTGTGAAACATTGTATAATT
CTCACTCTANTTTTTTTTGTTTTTTATGCTCTCTCNCCGTCCTACTTCTT
TGTTTTTTTTAATTCCTTTCTATTTTGTTTTTTTTTTTTTTTATCATCTT
ATTTTCTTGTCTTTGTTACGGAAGTGTGTACTTTTGCGNNNGNCCNNNNN
NNNNNNNNGGTTTTTTTTTTTTTATTTTTNNNNNNNNNGCTTTTATTTTT
TTAATTTTGGGGTTTTTAGGGCCTCTTTGTTTCGGGGGCCCCGGGGCCTT
TTGGGGNCCCCTTTTCCTCNTCTTATATTTTTTAAAGGGTTGGGAAAAAC
CTTTTTTTTTTTTAGAAAAAGGGGGTTTTTTTTTTTCCGGGGGAAAAATT
TTTTTCGGGGTTAGAAAATTTTTTTTTTTTTTTTTTTCCCCTTTTTTTTT
TTTTTTTTTTTTAAAAAAAGAGGGAAATTTTTCTTTTTTTTTTTTTTTAC
AAGCGGGAAGAAACCCTTTTTTTTTTTTTTTTTTGGGGCCTTTTTTTTTT
TTATAAAATAACCTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTTTATA
AAAAAAAAATTTTTTTTTTTTTGGGGNAAAAAAAAAAAAAAAATTTTTTT
TTTTTTTTTTTTTCCCCCCCTCCTTTTTTTTTTTTTTTTCTGTGTTTGGT
GTTTAAAAGAAAAAAATAAAATTTTTTTCTTTTTAATAAAAAATAAAAGA
TTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCCTTTTTTTTTTTTTT
TTTGGGGGGGTTTTGTTTGAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_b15.b1 MSMg01no540_b15.b1 CHROMAT_FILE:
MSMg01no540_b15.b1 PHD_FILE: MSMg01no540_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:16 2005
         (706 letters)



>mm_chr9_123850071_123851176
          Length = 1106

 Score = 1290 bits (667), Expect = 0.0
 Identities = 694/703 (98%), Gaps = 1/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctgttatcccactgacttgtccttaaatattcgtaaaagctaaagaggctt 63
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 ggaattcttctgttagcccactgacttgtccttaaatattcgtaaaagctaa-gaggctt 263

                                                                       
Query: 64  tttttgccatctggtatgctttcagggtttgggagtcattatctttgaaaggtaaaccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttttgccatctggtatgctttcagggtttgggagtcattatctttgaaaggtaaaccca 323

                                                                       
Query: 124 taaggaggtaggtccgaatcaccctgtgaccatgggaatttagcctaggtctcttgttcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaggaggtaggtccgaatcaccctgtgaccatgggaatttagcctaggtctcttgttcc 383

                                                                       
Query: 184 cggctgtcaaagatggaaatgatgctgtgctggctctgagcacagaggcaagcatcatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cggctgtcaaagatggaaatgatgctgtgctggctctgagcacagaggcaagcatcatgc 443

                                                                       
Query: 244 ctctgtattcttggaatctaacagccaccttgtcgataaggtcaaataagcctgtaagat 303
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 444 ctctgtattcttggaatctaacagccaccttgtcgacaaggtcaaataagcctgcaagat 503

                                                                       
Query: 304 ggtaactaagatgtctattgccccaccaatagtcagcctcacttaacctgagactagatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtaactaagatgtctattgccccaccaatagtcagcctcacttaacctgagactagatg 563

                                                                       
Query: 364 gtgtttcatgagtggattcagcgaaagaccacagaactgcttgcccagttaagcttggct 423
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgcttcatgagtgggttcagcgaaagaccacagaactgcttgcccagttaagcttggct 623

                                                                       
Query: 424 cacatgatgaactttataactgttaatgataataattaattgggctttaaaccattagct 483
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 cacatgatgaactttataactgttaatgataataattaattgagctttaaaccattagct 683

                                                                       
Query: 484 ttaagttggcttattaggcaatgatttgaagctatgtcttgttaaagagcacccttcctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaagttggcttattaggcaatgatttgaagctatgtcttgttaaagagcacccttcctg 743

                                                                       
Query: 544 tcttgagatcatagagggtcatctatatcctcacactttcaccattttgccttcatgttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttgagatcatagagggtcatctatatcctcacactttcaccattttgccttcatgttt 803

                                                                       
Query: 604 aaatatatagtcaatctgaaattaatgtgtattacaaatgcggacctagtagatatctgt 663
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 804 aaatatatagtcaatctgaaattaatgtgtattacaaattcagacctagtagatatctgt 863

                                                      
Query: 664 taatatttccggtagtgttagatgtgtgaaacattgtataatt 706
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 taatatttccggtagtgttagatgtgtgaaacattgtataatt 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)