BAC Information

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BAC

Clone NameMSMg01-540G14
Chromosome9 (Build37)
Map Location 20,780,616 - 20,781,263
singlet/doubletsinglet
Overlap geneEdg5
Upstream geneOlfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1
Downstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540G14.T7 (MSMg01no540_g14.b1)MSMg01-540G14.TJ (MSMg01no540_g14.g1)
ACCAG606669AG606670
length741756
length of high quality
(start - end)		484 (45 - 528)648 (74 - 721)
definitionCHROMAT_FILE: MSMg01no540_g14.b1 PHD_FILE: MSMg01no540_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:40 2005CHROMAT_FILE: MSMg01no540_g14.g1 PHD_FILE: MSMg01no540_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATGATTACCAGAATGTCCTGGAAAGCACAGAGATCCTCCTGCC
TCTGCCTCCCAGGTACTGGAGTGGGTTTTGCTGTTGTTATTTCTTTATTT
TGCTTTATTTTGTTTTGAGACACTGTCTCATGTAGCCCTGGCTGATTTAA
AATTCACCCCATGGCTAAAGATGACTCTGGACTTCCAATGCCTCTGCCTC
TACCACCTCCACACTAGGACCACAGCATGTACCACCATGCTGAGTTTATA
GGGTGCTGGGATTGGAACCTGGGACACTCCATACATGCTAGGCAAGCATT
CTGTGGTCTGAGCTTCTGCCCCAGCCTTTTTAATTCTTAGTTTGAAACAG
GCTGGCTTCAAATTTGTATAGCTCAGGCTGATCTTAAATTCCTGACCTTC
TTCCCTCAAGTACTGTGATTACAGGGTGTGTTTGTGTGTGTGTGTTTGTG
TGTGTGTGTGTGTGTGTGTGTGTGNNTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNGNNNNNNNNNNTNNNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTNTTTTTNNNTTTTTNTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTNTTTTTTTNNTTTNTNNNNTTTTTTTTTTTN
TTNTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTT

GCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCAAGTCGCCGCCGGAAAGAGGAG
GAGAGGAGGGCGGGGCGAGCAGGGAGTTGGGGCCGGAGGCAGCGGCTCTG
CCCGCCTCTCTCTTGTCCTGGGTCCCCAACTCCGGGACATAGACCGAGCA
CAGCCAACAGTCTCCAAAACCAACCACTGGCTGTCCCGGGGCGCAGACGC
CAAGGCCACTCAGGCCAGGGCAGGGACCCCGGCCGGCCTAGCCAGGTGAG
CGCGCGGGGCAGAGGGGAGGTTCCGATCTGGGCGGCCGCGGTTCACGGAG
ACCCTGAGATCCCAGCTGGGGGGCCCGGTCCGGGGTCAGGCGCTCGTACA
GGCGTTGCACGCGCTGCTCCAGGCTCTGCTGCACCGAGGGAACGGATCAT
CTACCATGCGCCCCTGCCCACTACTCCAGGCAGCTCGCCACCTACTCAGT
GGCGCACCCCCAGACTGAGCTCCCCGCCTTCCTTCGGGCAGGAAGTTGGC
GCTGAAGAGAAAGGCGGAATCCGAGCGCTTTGGGCTGGAGACTTTGCAAG
ACTGGATGGGGGTTCTCAGGAAGCAGGGTTTGGGGCAGTGAGGTTGTTGG
GGAGAGGTGCAGCATCCCTTCTTCTCTGTCTCCGGCTAGGATGAAAGGTG
CTACGTACGAGCGAGCGGGGAAAGCCTTCAAAGTCATGGGCGGGGTCCCC
GGCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_g14.g1 MSMg01no540_g14.g1 CHROMAT_FILE:
MSMg01no540_g14.g1 PHD_FILE: MSMg01no540_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:40 2005
         (648 letters)



>mm_chr9_20780416_20781463
          Length = 1048

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaagtcgccgccggaaagaggaggagaggagggcggggcgagcagggagttggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 attgcaagtcgccgccggaaagaggaggagaggagggcggggcgagcagggagttggggc 789

                                                                       
Query: 61  cggaggcagcggctctgcccgcctctctcttgtcctgggtccccaactccgggacataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cggaggcagcggctctgcccgcctctctcttgtcctgggtccccaactccgggacataga 729

                                                                       
Query: 121 ccgagcacagccaacagtctccaaaaccaaccactggctgtcccggggcgcagacgccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgagcacagccaacagtctccaaaaccaaccactggctgtcccggggcgcagacgccaa 669

                                                                       
Query: 181 ggccactcaggccagggcagggaccccggccggcctagccaggtgagcgcgcggggcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggccactcaggccagggcagggaccccggccggcctagccaggtgagcgcgcggggcaga 609

                                                                       
Query: 241 ggggaggttccgatctgggcggccgcggttcacggagaccctgagatcccagctgggggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggggaggttccgatctgggcggccgcggttcacggagaccctgagatcccagctgggggg 549

                                                                       
Query: 301 cccggtccggggtcaggcgctcgtacaggcgttgcacgcgctgctccaggctctgctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cccggtccggggtcaggcgctcgtacaggcgttgcacgcgctgctccaggctctgctgca 489

                                                                       
Query: 361 ccgagggaacggatcatctaccatgcgcccctgcccactactccaggcagctcgccacct 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccgagggaacagatcatctaccatgcgcccctgcccactactccaggcagctcgccacct 429

                                                                       
Query: 421 actcagtggcgcacccccagactgagctccccgccttccttcgggcaggaagttggcgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 actcagtggcgcacccccagactgagctccccgccttccttcgggcaggaagttggcgct 369

                                                                       
Query: 481 gaagagaaaggcggaatccgagcgctttgggctggagactttgcaagactggatgggggt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 gaagagaaaggcggaatccgagcgctttgagctggagactttgcaagactggatgggggt 309

                                                                       
Query: 541 tctcaggaagcagggtttggggcagtgaggttgttggggagaggtgcagcatcccttctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctcaggaagcagggtttggggcagtgaggttgttggggagaggtgcagcatcccttctt 249

                                                           
Query: 601 ctctgtctccggctaggatgaaaggtgctacgtacgagcgagcgggga 648
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 248 ctctgtctccggctaggatgaaaggtgctacggacgagcgagcgggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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