NNNNCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGAT
CTTGTCACATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGT
CTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTA
AACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTT
TTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTT
GGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGA
GTTGGGTAGAGTACCTTCTAATTCTATTTTGTGAAATAGTTTGTGCAGAA
TTGGAATTAGAACTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCA
TCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTAT
TTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCA
ACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTT
TCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTNGTTTG
GATTTCTTCAGGATCTGGTGTTAN

TTCCTCGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCATGCTCATATAGGATCTC
TTGGGATGGACAACCTGTCATTCTGGTGTTTTCTATGTTCATCTACCTAT
GACACCATGTGACACTCCCTTCGTGGGAAGGCTCTTCTCTATAAGCAACC
AGAGAGCACTCCTGAAAAATGTCAAGTCTTAATGCCACAGTAGAAAAGTC
CCACAAAAGGTGACATTGTAGACATGGTTGTGTTCCAGACCTGCAGAATC
ACATGGTCCCCGTGCTGGCTAGTTCTTGTGTCAACTTCACACGAACTAGT
GTTATGCGGGAAGAGGGAATCTTAATCTAGAAAATGATTTCATATGATTG
GACTGTGAGCAAATCTGTAAGGCATTATCTTGATTGAGGATTGATGTAAG
TGGGCCTAGGTCACTTTGGGCAGTGCCACCCTCGGGCACATGCCCATCCC
CAATGCCAAACACAAAGCTTCCTAGTTGGTATCAAAAGGAGGCTAAGCAA
GGAGGCTAGTGAACAAACCAGTAAGTTGAAACAAACCCTTTTCTCCTTTA
GTTGATATGGTCACTGTTTTATCACAGCAATCGGAACATTAACAAGGCAG
TCCTTAAGGGAGTCTGCCTTCAGACTTGAAGAGAGGTAGAACTCAGAAAC
CTGAAGATGAAGGAGACAGGGATGAAACAAACCAN

Query= MSMg01no540_n04.g1 MSMg01no540_n04.g1 CHROMAT_FILE:
MSMg01no540_n04.g1 PHD_FILE: MSMg01no540_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:14 2005
         (632 letters)



>mm_chr9_112495561_112496592
          Length = 1032

 Score = 1056 bits (546), Expect = 0.0
 Identities = 607/632 (96%), Gaps = 8/632 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccatgctcatataggatctcttgggatggacaacctgtcattctggtgttttctatgt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccatgctcatatagggtctcttgggatggacaacctgtcattctggtgttttctatgt 260

                                                                       
Query: 61  tcatctacctatgacaccatgtgacactcccttcgtgggaaggctcttctctataagcaa 120
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 261 tcatctacctatgacaccatgtgacactccctccttgggaaggctcttctctataagcaa 320

                                                                       
Query: 121 ccagagagcactcctgaaaaatgtcaagtcttaatgccacagtagaaaagtcccacaaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 ccagagagcactactgaaaaatgtcaagtcttaatgccacagtaggagagtcccacaaaa 380

                                                                       
Query: 181 ggtgacattgtagacatggttgtgttccagacctgcagaatcacatggtccccgtgctgg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgacattgtaaacatggttgtgttccagacctgcagaatcacatggtccccgtgctgg 440

                                                                       
Query: 241 ctagttcttgtgtcaacttcacacgaactagtgttatgcgggaagagggaatcttaatct 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 441 ctagttcttgtgtcaacttcacacgaactagtgttatgcgggaagaaggaatcttaatcc 500

                                                                       
Query: 301 agaaaatgatttcatatgattggactgtgagcaaatctgtaaggcattatcttgattgag 360
           |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct: 501 agaaaatgatttcatatgatcggactgtgagcaaatctgtaaggaattttcttgattgag 560

                                                                       
Query: 361 gattgatgtaagtgggcctaggtcactttgggcagtgccaccctcgggcacatgcccatc 420
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 561 gattgatgtaagtgggcctaggtcactttgggcagtgccaaccttgggcacatgcccatc 620

                                                                       
Query: 421 cccaatgccaaacacaaagcttcctagttggtatcaaaaggaggctaagcaaggaggcta 480
           |||||||||||||||||||||||||||||||||||||||||||  ||||||||       
Sbjct: 621 cccaatgccaaacacaaagcttcctagttggtatcaaaaggagattaagcaag------- 673

                                                                       
Query: 481 gtgaacaaaccagtaagttgaaacaaacccttttctcctttagttgatatggtcactgtt 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 -tgaacaaaccagtaagttgaaacaaacccttttctcctttagttgatatggtcactgtt 732

                                                                       
Query: 541 ttatcacagcaatcggaacattaacaaggcagtccttaagggagtctgccttcagacttg 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 733 ttatcacagcaatcggaacattaacaagacagtccttaagggagtctgccttcagacttg 792

                                           
Query: 601 aagagaggtagaactcagaaacctgaagatga 632
           ||||||||||||||||||||||||||||||||
Sbjct: 793 aagagaggtagaactcagaaacctgaagatga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)