Query= MSMg01no541_d07.b1 MSMg01no541_d07.b1 CHROMAT_FILE:
MSMg01no541_d07.b1 PHD_FILE: MSMg01no541_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:46 2005
(686 letters)
>mm_chr9_31778982_31780067
Length = 1086
Score = 1259 bits (651), Expect = 0.0
Identities = 675/683 (98%), Gaps = 2/683 (0%)
Strand = Plus / Plus
Query: 5 gaattccagaagggccagagtgacatagagagactgtctcaaaaaaagagcaacaaggaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaagggccagagtgacatagagagactgtctcaaaaaaagagcaacaaggaa 264
Query: 65 aataccagaatctagacaaataagagcaaccttaggg-tgaggaaagtagtgtgtgctgg 123
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 265 aataccagaatctagacaaataagagcaacctt-gggatgaggaaaaaagtgtgtgctgg 323
Query: 124 gggtgtggaactagctttccttcatagaaggaaagggtagccagtggaggataccattaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtgtggaactagctttccttcatagaaggaaagggtagccagtggaggataccattaa 383
Query: 184 tttgggaagtagagaaaaactgtgtcttcctcagcattttacagaggttcaagccttggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgggaagtagagaaaaactgtgtcttcctcagcattttacagaggttcaagccttggt 443
Query: 244 agtgctctccccttggatctgggcagctgtcagaaaatcagtggggaggaggaacaaaca 303
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 444 agtgctctccccttggatctggacagctgtcagaaaatcaatggggaggaggaacaaaca 503
Query: 304 tatgtcaagacacaggcagcatctaactgcaaaagctgagccacaggcccagctccacca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatgtcaagacacaggcagcatctaactgcaaaagctgagccacaggcccagctccacca 563
Query: 364 gatggcagtgcgtcaacagggagcctggctacgagactggggaaccccaattacatgacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatggcagtgcgtcaacagggagcctggctacgagactggggaaccccaattacatgacc 623
Query: 424 ctgtgtgggtgcaggagcagggagactgttagattgctgctgataatgtttcgtgtctca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtgtgggtgcaggagcagggagactgttagattgctgctgataatgtttcgtgtctca 683
Query: 484 tgagctaatgaggatttgttttcttaacagcaaagaatgcaatagtgagtccattactat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagctaatgaggatttgttttcttaacagcaaagaatgcaatagtgagtccattactat 743
Query: 544 attctttgtctacaataaaaactatgaccgggatggggagttatgacacaggaatgaacc 603
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attctttgtccacaataaaaactatgaccgggatggggagttatgacacaggaatgaacc 803
Query: 604 tgtaataggacaggcattgtgtaccaattaaatcaccagcattgttattgtcaattataa 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtaataggacaggcattgtataccaattaaatcaccagcattgttattgtcaattataa 863
Query: 664 acatcactgaactggccttccag 686
|||||||||||||||||||||||
Sbjct: 864 acatcactgaactggccttccag 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_d07.g1 MSMg01no541_d07.g1 CHROMAT_FILE:
MSMg01no541_d07.g1 PHD_FILE: MSMg01no541_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:46 2005
(601 letters)
>mm_chr9_31934615_31935615
Length = 1001
Score = 671 bits (347), Expect = 0.0
Identities = 351/353 (99%), Gaps = 2/353 (0%)
Strand = Plus / Minus
Query: 1 actatatgtggttaacgtaacaatgaacctgattaaacaggtaattaactgaagtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actatatgtggttaacgtaacaatgaacctgattaaacaggtaattaactgaagtctctc 292
Query: 61 atatttctaaactgatgacttaaaaacagtacatgatgaaaaagagaaaggaacaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atatttctaaactgatgacttaaaaacagtacatgatgaaaaagagaaaggaacaagcca 232
Query: 121 gtatttttaaaacaatgtctgaaaaagccttgggctggagagatagctctgtgggtaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtatttttaaaacaatgtctgaaaaagccttgggctggagagatagctctgtgggtaaga 172
Query: 181 gcactgactgctcttccaaaggtcctgagttcaaatcccagcaactacatggtggcttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gcactgactgctcttccaaaggtcctgagttcaaatcccagcaactacatggtggcttac 112
Query: 241 aaccatctgtaatgagatctgacgccctcttctggtgcatctgaagacagctacagtgaa 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaccatctgtaatgaga--tgacgccctcttctggtgcatctgaagacagctacagtgaa 54
Query: 301 cttacatataataataaataaatcttaaaaaaaaaactaataaaagcaatcaa 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cttacatataataataaataaatcttaaaaaaaaaactaataaaagcaatcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
