Query= MSMg01no541_i20.b1 MSMg01no541_i20.b1 CHROMAT_FILE:
MSMg01no541_i20.b1 PHD_FILE: MSMg01no541_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:15 2005
(686 letters)
>mm_chr9_50229030_50230115
Length = 1086
Score = 1212 bits (627), Expect = 0.0
Identities = 669/683 (97%), Gaps = 1/683 (0%)
Strand = Plus / Plus
Query: 5 gaattctggaaag-tctcattagttaagagcatcagctgcttttccaggaggcctgggtt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctggaaagatctcattagttaagagcatcagctgcttttccaggaggcctgggtt 263
Query: 64 caataaccaacactccacgtagtggctaatgactgtcttaacaccagttccaggggaatc 123
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 caataaccaacactccatgtagtggctaatgactgtcttaacaccagttccaagggaatc 323
Query: 124 tgatgccctcttctggccgctatgggtactgcatgcacatgggatgcctacatacaggtg 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatgccctcttctggccactatgggtactgcatgcacatgggatgcctacatacaggtg 383
Query: 184 agatacacaaaggcataaaatggaaataaaaaataaatagaaagagaggggcaagcacac 243
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 384 agatacacaaaggcataaaatggaaataaaaaataaatagaaagaaaggggcaaacacac 443
Query: 244 cagctctccagtgggtcttcagcaggcctgcgcctcgaactaccagccacatgctgcctg 303
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagctctccagtgggtcctcagcaggcctgcgcctcgaactaccagccacatgctgcctt 503
Query: 304 actttccccagctccttttcacacataaacccatggctcctgagcccttattctaggcca 363
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actttcctcagctccttttcacacataaacccatggctcctgagcccttattctaggccc 563
Query: 364 ggtctccagtaaacatcaactaagacacatagctggactactctcaccccttgcatgctg 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 ggtctccagtaaacatcaactaagacacgtagctggactactctcaccccttgcatgctg 623
Query: 424 agacccatcttagaacataattagacatttccatcaaatgccactgactggaaaacgtga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacccatcttagaacataattagacatttccatcaaatgccactgactggaaaacgtga 683
Query: 484 aacctcttaatgtcagtaactaggctaagggacagacgttagctgtttctaattagcagg 543
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 aacctcttaatgtcagtaactaggctaagggacagacgttggctgtttctaattagcagg 743
Query: 544 ctatagctacttctcattgccacttcgggaagctgcaggtctccacttcacacatgcgta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 ctatagctacttctcattgccacttcgggaagctgcaggtctccacttcacacatgctta 803
Query: 604 gtcctccagctgcgactgctcagagccctcagctgttcccagcagtccagaccacctctt 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtcctccagctgcgactgctcagggccctcagctgttcccagcagtccagaccacctctt 863
Query: 664 tcatctgccctgttttgtgtaac 686
|||||||||||||||||||||||
Sbjct: 864 tcatctgccctgttttgtgtaac 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_i20.g1 MSMg01no541_i20.g1 CHROMAT_FILE:
MSMg01no541_i20.g1 PHD_FILE: MSMg01no541_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:15 2005
(571 letters)
>mm_chr9_50396298_50397268
Length = 971
Score = 745 bits (385), Expect = 0.0
Identities = 402/411 (97%), Gaps = 6/411 (1%)
Strand = Plus / Minus
Query: 167 caccttcaattccagcatccaggaggcagaagttggcagatcactgtgagttcaaggcta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 caccttcaattccagcatccaggaggcagaagttggcagatcactgtgagttcaaggcta 912
Query: 227 gcctggtctacatgagccaggcatggtggttcacaccttcaattccagcatccaggaggc 286
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gcctggtctacataagccaggcatggtggttcacaccttcaattccagcatccaggaggc 852
Query: 287 agaagttggcagatcactgtgagttcaaggccagccaagtctacatagtgaaaccgtgac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 851 agaagttggcagatcactgtgagttcaaggccagccaagtctacatagtgaaaccctgac 792
Query: 347 tc------aaaaaaaaaaaaaaaaaaaagcaaacaaacaaaaaacaaaaaaacccaagtc 400
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tcaaaaaaaaaaaaaaaaaaaaaaaaaagcaaacaaacaaaaaacaaaaaaacccaagtc 732
Query: 401 ctaattatttataagtgtaattgaatgcctggaaaggcggaggtttaagagtacgctgct 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 731 ctaattatttataagtgtaattgaatgcctggaaaggcggaggtttaagagtacactgct 672
Query: 461 tcttgacttaagtcgaggctttgaaccacctccagcagttactagtttaagtaagtcaga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tcttgacttaagtcgaggctttgaaccacctccagcagttactagtttaagtaagtcaga 612
Query: 521 gtgaggatggcagatcatgcctataaccctaggatctgggagacagagtca 571
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtgaggatggcagatcatgcctataaccctaggatctgggagacagagtca 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
