Query= MSMg01no542_p17.b1 MSMg01no542_p17.b1 CHROMAT_FILE:
MSMg01no542_p17.b1 PHD_FILE: MSMg01no542_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:11 2005
(704 letters)
>mm_chr9_100026554_100027657
Length = 1104
Score = 1083 bits (560), Expect = 0.0
Identities = 647/702 (92%), Gaps = 43/702 (6%)
Strand = Plus / Minus
Query: 5 gaattctttcttattctagaactcgacgttcatggaccaggcttgttacaactttaataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattctttcttattctagaactcgacgttcatggaccaggcttgttacaactttaataa 805
Query: 65 ctgaagaaatcaaataattacctatgtctgtgtggtcgcagaaaaatttctagagaataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctgaagaaatcaaataattacctatgtctgtgtggtcgcagaaaaatttctagagaataa 745
Query: 125 gaaaatcttgtgcttccatgtttaaatcaagtaccagccaaagctttaaagaaaagctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaaatcttgtgcttccatgtttaaatcaagtaccagccaaagctttaaagaaaagctga 685
Query: 185 taaaactgctcatgagtacagattttatctctccttaactctgagtacgagagcaagacc 244
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaaactgctcacgagtacagattttatctctccttaactctgagtacgagagcaagac- 626
Query: 245 ggctgctgacttcctgggcaatgaggtaaggggtgagactggctgctgacttcttgggca 304
|||||||||||||||||||||
Sbjct: 625 ---------------------------------------tggctgctgacttcttgggca 605
Query: 305 atgaggtaaggggtgagactggctgctgacttcttgggcaatgaggtaaggggtgtgtgt 364
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 604 atgaggtaaggggcgagactggctgctgacttcatgggcaatgaggtaaggggcatgtgt 545
Query: 365 tagctcatcctgaagattccggatttcatttagctcacagtttgtgaggttgaagagtga 424
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct: 544 tagctcatcctgaagattctggctttcatttagctcacagtttgtgaggttgaagagaga 485
Query: 425 agacgtccctggtagcaaacagctcactcacagttgttgcaatgcactggtgggagaatt 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 484 agacgtccctggtagcaaacagctcactcacagttgttgtaatgcactggtgggagaatt 425
Query: 485 aaatgtctgacagtgactctgccgagaggaga-tgcctaggcatcttgcttcattctttg 543
|||||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||
Sbjct: 424 aaatgtctgacagtgactctgctgagagg-gaatgcctgggcatcttgcttcattctttg 366
Query: 544 cagacttcccttcatgcttttttaaaatattttt-ccttttgttgattttgccttctatc 602
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 365 cagacttcccttcatgcttttttaaaatattttttccttttgttgattttgccttctatc 306
Query: 603 cttttgctatgatgaatcttgcctatgagcaacggaaaagcaaacaaaactcccaagttc 662
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cttttgctacgatgaatcttgcctatgagcaacggaaaagcaaacaaaactcccaagttc 246
Query: 663 tcaagacccctctacctgactctggaatttgggaagcggaag 704
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcaagacccctctacctgactctggaatttgggaagcggaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_p17.g1 MSMg01no542_p17.g1 CHROMAT_FILE:
MSMg01no542_p17.g1 PHD_FILE: MSMg01no542_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:11 2005
(667 letters)
>mm_chr9_99826624_99827690
Length = 1067
Score = 1203 bits (622), Expect = 0.0
Identities = 652/662 (98%)
Strand = Plus / Plus
Query: 1 accgttatgaaaagtgttttgattttgagctgatcctcgtcatgctagcatgtcttgcaa 60
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 201 accgttgtgaaaagtgttttgattctgagctgatcctcgtcatgctaggatgtcttgcaa 260
Query: 61 ttctctatcgcctgaacttttgattcatgcctctagatcttaaggatgctgaataaaaag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctctgtcgcctgaacttttgattcatgcctctagatcttaaggatgctgaataaaaag 320
Query: 121 ccaagcctcatagagctggttgccacagtgatgaagaaacccaaaactttctataagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagcctcatagagctggttgccacagtgatgaagaaacccaaaactttctataagttt 380
Query: 181 aagttctcctggttgtatgtgtgggtgtcagctgtctttgtcagtcatcgtctacctggt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aagttctcctggttgtatgtgtgggtgtcagctgtcttcgtcagtcatcgtctacctggt 440
Query: 241 ttttgagacaacatctttatggtttggagctcatcaaccttgttggactggatgggtggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgagacaacatctttatggtttggagctcatcaaccttgttggactggatgggtggt 500
Query: 301 cagcctgctctgaggatgctcttacctccagtccccgacattctgacctgagcccagatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcctgctctgaggatgctcttacctccagtccccgacattctgacctgagcccagatc 560
Query: 361 tctgtttgcctagcacgcactttacagattgagccatcgctgcaccttctcctgagcttt 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tctgtttgcctagcacgcactttacagattgagccatcgctgtaccttctcctgagcttt 620
Query: 421 agggtctaagttgttattgtgaggatttaccaagctcctgcccaactgtctggtagcacc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggtctaagttgttattgtggggatttaccaagctcctgcccaactgtctggtagcacc 680
Query: 481 ggtagtgttctcagtgtctctgaacctactggggagctgctctcctttgccgtcccagct 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtagtgttctcagtgtctctgaacctactggggagctgctctcctttgccgtcccagct 740
Query: 541 ggcagctacctcgacatctgggggctcctgattcgttcagagttaaggttgatactttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 ggcagctacctcgacatctgggggctcctgattcgttcagagttaaggttgatgctttcc 800
Query: 601 cagagtcaggagtgtttgctccatcagtgtctatagcagttgtgattgtaattaggtaaa 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 cagagtcaggagtgtttgctccatcactgtctatagcagttgtgattgtaattaggtaaa 860
Query: 661 tg 662
||
Sbjct: 861 tg 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
